View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_high_18 (Length: 285)
Name: NF16693_high_18
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 39656442 - 39656559
Alignment:
| Q |
14 |
agatgaaaatgaaggaaatgagataatgatgagttaattccagtagctttatgagttttatttcggttaaaagagataaacgaaaatgaaggaaatggaa |
113 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
39656442 |
agatgaaagtgaaggaaatgagataatgatgagttaattccggtagctttatgagttttatttcggttaaaagatataaatgaaaatgaaggaaatggaa |
39656541 |
T |
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| Q |
114 |
atggccaatccagaggcg |
131 |
Q |
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| T |
39656542 |
atggccaatcgagaggcg |
39656559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 131
Target Start/End: Complemental strand, 3820906 - 3820789
Alignment:
| Q |
14 |
agatgaaaatgaaggaaatgagataatgatgagttaattccagtagctttatgagttttatttcggttaaaagagataaacgaaaatgaaggaaatggaa |
113 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
3820906 |
agatgaaagtgaaggaaatgagataatgatgagttaattccggtagctttatgagttttatttcggttaaaagatataaatgaaaatgaaggaaatggaa |
3820807 |
T |
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| Q |
114 |
atggccaatccagaggcg |
131 |
Q |
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|||||||||| ||||||| |
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| T |
3820806 |
atggccaatcgagaggcg |
3820789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 39988057 - 39988147
Alignment:
| Q |
41 |
gatgagttaattccagtagctttatgagttttatttcggttaaaagagataaacgaaaatgaaggaaatggaaatggccaatccagaggcg |
131 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39988057 |
gatgagttaattccagtagctttatgagttttatttcggttaaaagagataaatgaaaatgaaggaaatggaaatggccaatccagaggcg |
39988147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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