View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_high_2 (Length: 829)
Name: NF16693_high_2
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 715; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 13 - 811
Target Start/End: Original strand, 15507043 - 15507837
Alignment:
| Q |
13 |
gaagcaaaggccggacatgtatgagagacagccgagtcggcgaagagcttccgtggaaggaagaaatgttccaaggccagtgaggatgatgaggtcatct |
112 |
Q |
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| T |
15507043 |
gaagcaaaggccggacatgtacgagagacaaccgagtcggcgaagagcttctgtggaaggaagaaatgttccaaggccagtgaggatgatgaggtcatct |
15507142 |
T |
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| Q |
113 |
tcacaggttggtgtcactgcacaaaactaccaatatccatggtcaataaagcttgataggtccttagtttcactcaatgagagtgagggtggtggctcca |
212 |
Q |
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| T |
15507143 |
tcacaggttggtgtcactgcacaaaactaccaatatccatggtcaataaagcttgataggtccttagtttcactcaatgagagtgagggtggtggctcca |
15507242 |
T |
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| Q |
213 |
caagtacagtactaacaaactctaactactgcaaatctcttgtttcatatagtgtgagtacttaactttctaataatatatgtttttcatcatctgaatg |
312 |
Q |
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| T |
15507243 |
caagtacagtactaacaaactctaactactgcaaatctcttgtttcatatagtgtgagtacttaactttctcata---tatgtttttcaccatctgaatg |
15507339 |
T |
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| Q |
313 |
atatagtataaaacaagagcaataactttcaaagaatcatgtttgagaggagtaatcaatcgttttggtctcagaaagtttgaggcgatgtcactgtagt |
412 |
Q |
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| T |
15507340 |
atatactataaaacaagagcaataact--cgaagaatcatgtttgagaggaataatcaatcgttttggtctcagaaagtgtgaggcgatgtcactgtagt |
15507437 |
T |
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| Q |
413 |
ccctaaatgaatcaaaattataaaa-aatatgctcgagtgtgtcttttgttaggaattttatgaaacaaactaatgaaagacacatttgatgaccaaact |
511 |
Q |
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| T |
15507438 |
ccctaaatgaatcaaaattataaaaaaatatgctcgagtgtgtcttttgttagtaattttatgaaacagactaatgaaagacacatttgatgaccaaact |
15507537 |
T |
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| Q |
512 |
aactaatcgaagatacatttagggactaaactgatagacaaaatacacaagggatattcttttttaaattttgtcaatacactagagtgacaacacttca |
611 |
Q |
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| T |
15507538 |
aactaatcgaagatacatttagggactaaactgatagacaaaatacacaagggatattcttttttaaattttttcaatacactagagtgataacacttca |
15507637 |
T |
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| Q |
612 |
cacatttaagaaccagaatgattgtttactcatttgctaagtatataaaagttgtcacttagtttggtaatattacaatgtctgatgaggttttataact |
711 |
Q |
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| T |
15507638 |
cacatttaagaaccagaatgattgtttactcatttgctaagtatataaaagttgtcacttagtttggtaatattacaatgtctgatgaggttttataact |
15507737 |
T |
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| Q |
712 |
gcttgttttggctgcagcctcatggaccaaggtattgacaatgcaccttccacaaaaacaaagagtagatccattttgcaggaactgcaaaagtctagag |
811 |
Q |
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| T |
15507738 |
gcttgttttggctgcagcctcatggaccaaggtattgacaatgcaccttccacaaaaacaaagagtagatccattttgcaggaactgcaaaagtctagag |
15507837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 46 - 272
Target Start/End: Original strand, 46632783 - 46633006
Alignment:
| Q |
46 |
gagtcggcgaagagcttccgtggaaggaagaaatgttccaaggccagtgaggatgatgaggtcatcttcacaggttggtgtcactgcacaaaactaccaa |
145 |
Q |
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| T |
46632783 |
gagtcggcggagaatttcggttgaaggaagaaatgttcctaggccagtgaggatgcagaggtcatcttcacaagtaggtgcagctgctcagaactaccaa |
46632882 |
T |
|
| Q |
146 |
tatccatggtcaataaagcttgataggtccttagtttcactcaatgagagtgagggtggtggctccacaagtacagtactaacaaactctaactactgca |
245 |
Q |
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| T |
46632883 |
tatccatggtcaattaagcttgacagatcggcggtttcactcaaagacagcgagtgtggt---tcgacaagtacaatgctcacaaacactaattactgca |
46632979 |
T |
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| Q |
246 |
aatctcttgtttcatatagtgtgagta |
272 |
Q |
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| T |
46632980 |
gatcccttgttgcatatgatgtgagta |
46633006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 518
Target Start/End: Complemental strand, 5531639 - 5531602
Alignment:
| Q |
481 |
actaatgaaagacacatttgatgaccaaactaactaat |
518 |
Q |
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| T |
5531639 |
actaatgaaaaacacatttgaagaccaaactaactaat |
5531602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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