View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_high_25 (Length: 255)
Name: NF16693_high_25
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 9031214 - 9031450
Alignment:
| Q |
1 |
tttcaacccaagtgacatggctataaagcataaccctgattcttatccaaacaatgtggcttcacaccaatccgtaactcccaaccaaatgacgtaacga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9031214 |
tttcaacccaagtgacatggctataaagcataaccctgattcttatccaaaccacgtggcttcacaccaatccgtaactcccaaccaaatgacgtaacga |
9031313 |
T |
|
| Q |
101 |
caaagcacaacccaaattccaatgcaagtcgtgtggcttcacatcggaaatgtaaattcatgtgagaagtttcgagattacgttttcatgagtaagaatc |
200 |
Q |
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| T |
9031314 |
caaagcacaacccaaattctaatgcaagtcgtgtggcttcacatcggaaatataaattcatgtgagaagtttcgagattacgttttcatgagtaagaatc |
9031413 |
T |
|
| Q |
201 |
gtaccaaacaagtcatgatttacaggtgtcacgctct |
237 |
Q |
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|||||||||| ||||||||||||||||||| ||||| |
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| T |
9031414 |
ataccaaacaaatcatgatttacaggtgtcaggctct |
9031450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 9013575 - 9013804
Alignment:
| Q |
9 |
caagtgacatggctataaagcataaccctgattcttatccaaacaatgtggcttcacaccaat-ccgtaactcccaaccaaatgacgtaacgacaaagca |
107 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||| |||||||||| |||||||||||||| |
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| T |
9013575 |
caagtgacatggctataaagcataaccctgattcctatccaaaccacgtggcttcacaccaaaaccgtaactccaaaccaaatgaggtaacgacaaagca |
9013674 |
T |
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| Q |
108 |
caacccaaattccaatgcaagtcgtgtggcttcacatcggaaatgtaaattcatgtgagaagtttcgagattacgttttcatgagtaagaatcgtaccaa |
207 |
Q |
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| T |
9013675 |
caacccaaattccaatgcaagacacgtggcttcacatcggaaatgtaaattcatgtgagaagtttcgagattacgttttcatgagtaagaatcgtatcaa |
9013774 |
T |
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| Q |
208 |
acaagtcatgatttacaggtgtcacgctct |
237 |
Q |
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| T |
9013775 |
acaagtcatgatttacaggtgtcacactct |
9013804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 8989357 - 8989593
Alignment:
| Q |
1 |
tttcaacccaagtgacatggctataaagcataaccctgattcttatccaaacaatgtggcttcacaccaat-ccgtaactcccaaccaaatgacgtaacg |
99 |
Q |
| |
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||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||||||| ||| ||| |||||||||| || |||||||||||||| |
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| T |
8989357 |
tttcaacccaagtgacatggctataaagcataagc-tgattcttatccaaaccacgtggctttacatcaaaaccgtaactccaaatcaaatgacgtaacg |
8989455 |
T |
|
| Q |
100 |
acaaagcacaacccaaattccaatgcaagtcgtgtggcttcacatcggaaatgtaaattcatgtgagaagtttcgagattacgttttcatgagtaagaat |
199 |
Q |
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| T |
8989456 |
acaaagcacaacccaaattctaatgcaagtcacgtggcttcacatcggaaatgtaaattaatgtgagaagtttcgagattatgttttcatgagtaagaat |
8989555 |
T |
|
| Q |
200 |
cgtaccaaacaagtcatgatttacaggtgtcacgctct |
237 |
Q |
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| T |
8989556 |
cgtaccaaacaagccatgatttacaggtgtcacgctct |
8989593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 9021900 - 9022125
Alignment:
| Q |
9 |
caagtgacatggctataaagcataaccctgattcttatccaaacaatgtggcttcacaccaat-ccgtaactcccaaccaaatgacgtaacgacaaagca |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |||||||||| || ||||||||||||||| |||||| |
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| T |
9021900 |
caagtgacatggctataaagcataaccctgattcttatccaaaccacgtggctttacaccaaaaccgtaactccaaatcaaatgacgtaacgataaagca |
9021999 |
T |
|
| Q |
108 |
caacccaaattccaatgcaagtcgtgtggcttcacatcggaaatgtaaattcatgtgagaagtttcgagattacgttttcatgagtaagaatcgtaccaa |
207 |
Q |
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||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9022000 |
caacccaaattccaatgcaagtcacgtggtttcacatcgaaaatgtaaattcatgtgagaagttttgagattacgttttcatgagtaagaatcgtaccaa |
9022099 |
T |
|
| Q |
208 |
acaagtcatgatttacaggtgtcacg |
233 |
Q |
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||||| |||||||||||||||||||| |
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| T |
9022100 |
acaagccatgatttacaggtgtcacg |
9022125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 8997467 - 8997718
Alignment:
| Q |
1 |
tttcaacccaagtgacatggctataaagcataaccctgattcttatccaaacaatgtggcttcacaccaat-ccgtaactcccaaccaaatgacgtaacg |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | ||||||||| |||| | |||| |||||| ||| |||||||||| |||||||||| ||||| |
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| T |
8997467 |
tttcaacccaagtgacatggctataaagcataacttttattcttatctaaaccacgtggtttcacatcaaaaccgtaactccaaaccaaatgagataacg |
8997566 |
T |
|
| Q |
100 |
acaaagcacaacccaaattccaat--------------gcaagtcgtgtggcttcacatcggaaatgtaaattcatgtgagaagtttcgagattacgttt |
185 |
Q |
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||||||||||| |||||||||||| ||||||| |||| |||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
8997567 |
acaaagcacaatccaaattccaatgcaagtatttcaatgcaagtcatgtgacttcacatcgaaaatgtaaattcatgtgagaaatttcgagattacgttt |
8997666 |
T |
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| Q |
186 |
tcatgagtaagaatcgtaccaaacaagtcatgatttacaggtgtcacgctct |
237 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
8997667 |
tcatgagtaagaatcgtatcaaacaagtcatgatttacgggtgtcacgctct |
8997718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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