View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16693_high_3 (Length: 668)

Name: NF16693_high_3
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16693_high_3
NF16693_high_3
[»] chr2 (2 HSPs)
chr2 (248-652)||(40952189-40952581)
chr2 (11-191)||(40952010-40952190)


Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 248 - 652
Target Start/End: Original strand, 40952189 - 40952581
Alignment:
Q  248 atatatatatgatccattggatcacgatgtgagtctccttactattggatcacgatgagatacctataatttcataggattgtcacattggattttaagc 347  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  40952189 atatatatatgatccattggatcacgatgtgagtctccctactattggatcacgatgagacacctataatttcataggattgtcacattgaattttaagc 40952288  T
Q  348 agttgtacaagtggtaggaacaccacatctttatacgagttttatcaacttagatgttaatcaacatctaatttttcatcaaacataagactcttaatta 447  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||| || ||  ||||||||||||||||||||||||||||||||||||||||    
T  40952289 agttgtacaagtggttcgaacaccacatctttatatgagttttatcaacttacatattgttcaacatctaatttttcatcaaacataagactcttaatta 40952388  T
Q  448 ttgatacttgatataccaacaaatttaaggatgttttattttaaatattagaaaattatcatcattatacttttgactcaactaannnnnnnnngtttct 547  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||         ||||||    
T  40952389 ttgatacttgatataccaacaaatttaaggatgttttattttaaatattagaaaattatcatcattatacttttgagtcaactaa-ttttttttgtttct 40952487  T
Q  548 tccattgtgaaagatttgtgaatggttgatatttcagtaaggaaccacttacttccactccttttatcactagctgccacattaataagccaattaggaa 647  Q
    ||||           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40952488 tcca-----------ttgtgaatggttgatatttgagtaaggaaccacttacttccactccttttatcactagctgccacattaataagccaattaggaa 40952576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 40952010 - 40952190
Alignment:
Q  11 cacagaataggccatttagttctagaacattgttctaacactatgaaaattttatttttcctgaaatcacttacaattaaaaataaattttctctgatta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40952010 cacagaataggccatttagttctagaacattgttctaacactatgaaaattttatttttcctgaaatcacttacaattaaaaataaattttctatgatta 40952109  T
Q  111 tatgatttcaaaaaataaataaagaactctgttttgtttagaggagtttttcctaaaattaatgtattttaatatatatat 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40952110 tatgatttcaaaaaataaataaagaactctgttttgtttagaggattttttcctaaaattaatgtattttaatatatatat 40952190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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