View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_high_9 (Length: 400)
Name: NF16693_high_9
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 17309758 - 17309599
Alignment:
| Q |
1 |
cctatgaagctaatcttcatttcttcgatcctattatttatgttacttgtccattttgtatacactggacgttcggactaggtcggcaccccaaacaact |
100 |
Q |
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| T |
17309758 |
cctatgaagctaatcttcatttcttcgatcctattatttatgttacttgtccattttgtatacactggacgttcggactaggtcggcaccccaaacaact |
17309659 |
T |
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| Q |
101 |
ttcatcctataccattaccatatatattattaaaacgagaaaaatatatataagaggggg |
160 |
Q |
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| T |
17309658 |
ttcatcctataccatttacatatatattattaaaacgagaaaaatatgtatcagaggggg |
17309599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 204 - 388
Target Start/End: Complemental strand, 17309566 - 17309384
Alignment:
| Q |
204 |
taatgtcacgtatttttcgccaaagnnnnnnnnntcacttgtgctagataatttttcaacaaaatattactggccattaattagctatggtgattaagaa |
303 |
Q |
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| T |
17309566 |
taatgtcacgtatttttagccaaagaaaaaaaaatcacttgtgctagataatttttcaacaaaatattactggccattaattagct--ggtgattaagaa |
17309469 |
T |
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| Q |
304 |
taagtaatacttggatgtgagtgattctctcttgttagatgcttacaggtattctctcatacaaaagtccatttcataagcagaa |
388 |
Q |
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| T |
17309468 |
taagtaatacttggatgtgagtgattctctcttgttagatgcttacaggtattctctcatacaaaagtccatttcataagcagaa |
17309384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 388
Target Start/End: Complemental strand, 17320861 - 17320797
Alignment:
| Q |
324 |
gtgattctctcttgttagatgcttacaggtattctctcatacaaaagtccatttcataagcagaa |
388 |
Q |
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| T |
17320861 |
gtgattctctcttgttagaggcttacatgcattctctcgtccaaatgcccatttcaaatgcagaa |
17320797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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