View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_low_11 (Length: 398)
Name: NF16693_low_11
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_low_11 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 9488487 - 9488884
Alignment:
| Q |
1 |
acagttgtggatgaatcctgcaaatgcgcgaacagaaagggaaagacgaagagaaaaaagagacattaaaatgctgcaggccaaaatataaacagataat |
100 |
Q |
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| T |
9488487 |
acagttgtggaagaatcctgcaaatgcgcgaacagaaagggaaagacgaagagaaaaaagagacattaaaatgctgcaggccaaaatataaacagataat |
9488586 |
T |
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| Q |
101 |
cacgagcaccggacaatccaccattgtcatcaaaattgtcatgctcaagtttggatacggaagggaaagaaagatcggtgacaatgaagcaattaacata |
200 |
Q |
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| T |
9488587 |
cacgagcaccggacaacccactatcgtcatcaaaattgtcatgctcaagtttggatacggaagggaaagaaagatcggtgacaatgaagcaattaacatc |
9488686 |
T |
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| Q |
201 |
gatggtgaaacctgacgttacttagatgatagcagaaacaaaagaaagcacaaacctggtttgagtcgtataggccaagccaagtgcagaaaagattctg |
300 |
Q |
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| T |
9488687 |
gatggtgaaacctgacgttacttagatgatagcagaaacaaaagaaagcacaaacctggtttgagtcgtataggccaagccaagtgcagaaaagattctg |
9488786 |
T |
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| Q |
301 |
accaccgtgcagatttgggtcacgtgcatgtcccaatatccaccgctactgccatggcgccagagaaaatgtgcagcagagaaatctaaggagacaaa |
398 |
Q |
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| T |
9488787 |
accaccgtgcagatttgggtcacgtgcatgtccgaatatccaccgctactgccatggcgccagagaaaatgtgtagcagagaaatctaaggagacaaa |
9488884 |
T |
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