View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_low_13 (Length: 383)
Name: NF16693_low_13
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 53038536 - 53038206
Alignment:
| Q |
17 |
atttcattcttcaattgtatttcaaccacgtatggtatcattaaaatatttgttaatttgagactttaaatttagcgaatatgaaataactcattcaaat |
116 |
Q |
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| T |
53038536 |
atttcattcttcaattgtatttcaaccacgtaaggtatcattaaaatatttgttaatttgagactttaaatttaccgaatatgaaataactcattcaaat |
53038437 |
T |
|
| Q |
117 |
tgtctagcatgcgtcaaaatgctcccttaagataattcacactacctataaataagagtttcattttcatattatgattgagagggtctgggacttcgac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53038436 |
tgtctagcatgcgtcaaaatgctcccttaagataattcacactacctataaataagagtttcattttcatattatgattgagagggtctgggacttcgac |
53038337 |
T |
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| Q |
217 |
aaatgttcatgtatttcattccaactcttattagaagaggtggtaccagtccacaaaatgagcattttggttaagactcaaaatggccgtttacnnnnnn |
316 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53038336 |
aaatgttcatgtatttgattccaactcttattagaagaggtggtaccagtccacaaaatgagcattttggttaagactcaaaatggttgtttactttttt |
53038237 |
T |
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| Q |
317 |
nagacatgggtgataacattgaaaaccgatc |
347 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
53038236 |
tagacatgggtgataacattgaaaaccgatc |
53038206 |
T |
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