View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16693_low_15 (Length: 319)
Name: NF16693_low_15
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 306
Target Start/End: Original strand, 42693115 - 42693404
Alignment:
| Q |
16 |
caaatcatggtccatgtacattccacactcctccattgagaccgtccgtaatcctcctattatgaaatttaattcatgattcttgtccaaactcaattac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
42693115 |
caaatcatggtccatgtacattccacactcctccattgagaccgtccgtaatcctcctattatgaaatttaattcatgattcatgtcaaaactcaattac |
42693214 |
T |
|
| Q |
116 |
acatcttttagggtatacaagtcattcatcactactttctatcnnnnnnnngtcattcatcactaattctcgaggtatacttcattttaaatctagtcac |
215 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
42693215 |
acatcttttaggctatacaagtcattcatcactactttctat-ataaaaaagtcattcatcactaattctcgaggtatacttcactttaaacctagtcac |
42693313 |
T |
|
| Q |
216 |
caccttaaacacttactaatttgaatgtcaaaatatttgcagatacatcatagttttgaaactaaatacggtcatccaaggaattttcttc |
306 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
42693314 |
caccttaaacgcttactaatttgaacgtcaaaatgtttgcagatacatcatacttttgaaaccaaatacggtcatccaagaaattttcttc |
42693404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University