View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_low_16 (Length: 317)
Name: NF16693_low_16
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 31363378 - 31363683
Alignment:
| Q |
1 |
gattacattgaaattattcatttttggagcagttttcagctattttcttattattatccgttcatccttttcttcaatagatgctagtgaaaagaaatac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31363378 |
gattacattgaaattattcatttttggagcagttttcagctattttcttattattatccgttcatccttttcttcaatagatgctagtgaaaagaaatac |
31363477 |
T |
|
| Q |
101 |
tgctctgaattccaagatggaaattcagtggttcttaatatggagtctctacaactggctagtactaatattcatagtaggatggaaaaactcgagactc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31363478 |
tgctctgaattccaagatggaaattcagtggttcttaatatggagtctctacaactggctagtactaatattgatagtaggatggaaaaactcgagactc |
31363577 |
T |
|
| Q |
201 |
gtgtgaaggcgcttgagcacggaaattcaaagtccattcaaatggttttggagccggtaagaaaacttaaacactcacaatcggtgatagaggatcccaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31363578 |
gtgtgaaggcgcttgagcacggaaattcaaagtccattcaaatggttttggagccggtaagaaaacttaaacactcacaatcggtgatagaggatcccaa |
31363677 |
T |
|
| Q |
301 |
cttcat |
306 |
Q |
| |
|
|||||| |
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|
| T |
31363678 |
cttcat |
31363683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 31313628 - 31313933
Alignment:
| Q |
1 |
gattacattgaaattattcatttttggagcagttttcagctattttcttattattatccgttcatccttttcttcaatagatgctagtgaaaagaaatac |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| |
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| T |
31313628 |
gattacattgaaattattcatttttggggcaattttcagctattttcttattattatccgttcatcctttccttcaatagatgctagagaaaataaaccg |
31313727 |
T |
|
| Q |
101 |
tgctctgaattccaagatggaaattcagtggttcttaatatggag---tctctacaactggctagtactaatattcatagtaggatggaaaaactcgaga |
197 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
31313728 |
tgctctgaattccaagatggaaattcagtggttcttaatatggtggattctctacaactggctagtactaatattggtagtaggttggaaaaactcgaga |
31313827 |
T |
|
| Q |
198 |
ctcgtgtgaaggcgcttgagcacggaaattcaaagtccattcaaatggttttggagccggtaagaaaacttaaacactcacaatcggtgatagaggatcc |
297 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31313828 |
ctcgtgtgaaggcgcttgagcacggaaattcaaagtccattcaaatggttttggagcctgtaagaaaacttaaacactcacaatcggtgatagaggatcc |
31313927 |
T |
|
| Q |
298 |
caactt |
303 |
Q |
| |
|
|||||| |
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|
| T |
31313928 |
caactt |
31313933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 31330306 - 31330475
Alignment:
| Q |
1 |
gattacattgaaattattcatttttggagcagttttcagctattttcttattattatccgttcatccttttcttcaatagatgctagtgaaaagaaatac |
100 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| | |
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| T |
31330306 |
gattaaattgaaattattcattcttggagcagtttttagctattttcttattattctccgttcatccttttcttcaatagatgctagagaaaataaacaa |
31330405 |
T |
|
| Q |
101 |
tgctctgaattccaagatggaaattcagtggttcttaatatggagtctctacaactggctagtactaata |
170 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |
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|
| T |
31330406 |
tactctgaattccaagatggaaattcagtggttcttgatatggattctctacaactggcgagtactaata |
31330475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 31379088 - 31379257
Alignment:
| Q |
1 |
gattacattgaaattattcatttttggagcagttttcagctattttcttattattatccgttcatccttttcttcaatagatgctagtgaaaagaaatac |
100 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| | |
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| T |
31379088 |
gattaaattgaaattattcattcttggagcagtttttagctattttcttattattctccgttcatccttttcttcaatagatgctagagaaaataaacaa |
31379187 |
T |
|
| Q |
101 |
tgctctgaattccaagatggaaattcagtggttcttaatatggagtctctacaactggctagtactaata |
170 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |
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|
| T |
31379188 |
tactctgaattccaagatggaaattcagtggttcttgatatggattctctacaactggcgagtactaata |
31379257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 31317990 - 31318060
Alignment:
| Q |
161 |
agtactaatattcatagtaggatggaaaaactcgagactcgtgtgaaggcgcttgagcacggaaattcaaa |
231 |
Q |
| |
|
||||||||| || ||||| ||||||| |||||| |||| |||||||||||||||||||| ||||||||| |
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| T |
31317990 |
agtactaatgttggtagtatgatggaacaactcgggacttatgtgaaggcgcttgagcacgaaaattcaaa |
31318060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 31369111 - 31369181
Alignment:
| Q |
161 |
agtactaatattcatagtaggatggaaaaactcgagactcgtgtgaaggcgcttgagcacggaaattcaaa |
231 |
Q |
| |
|
||||||||| || ||||| ||||||| |||||| |||| |||||||||||||||||||| ||||||||| |
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|
| T |
31369111 |
agtactaatgttggtagtatgatggaacaactcgggacttatgtgaaggcgcttgagcacgaaaattcaaa |
31369181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 31407126 - 31407075
Alignment:
| Q |
12 |
aattattcatttttggagcagttttcagctattttcttattattatccgttc |
63 |
Q |
| |
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||||| ||||| ||||||||| ||||||||||| |||||||||||| ||||| |
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| T |
31407126 |
aattagtcattgttggagcaggtttcagctattctcttattattatacgttc |
31407075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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