View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16693_low_17 (Length: 315)

Name: NF16693_low_17
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16693_low_17
NF16693_low_17
[»] chr6 (43 HSPs)
chr6 (19-301)||(29894209-29894493)
chr6 (19-301)||(29084674-29084958)
chr6 (22-301)||(29098999-29099280)
chr6 (22-301)||(29115917-29116198)
chr6 (22-301)||(29073419-29073700)
chr6 (22-301)||(29105992-29106273)
chr6 (19-298)||(29897736-29898017)
chr6 (19-298)||(29348657-29348938)
chr6 (19-298)||(29366480-29366761)
chr6 (19-299)||(29834873-29835155)
chr6 (19-299)||(29866307-29866589)
chr6 (22-298)||(29358041-29358319)
chr6 (39-298)||(29902915-29903180)
chr6 (19-296)||(28926606-28926885)
chr6 (19-296)||(29905300-29905579)
chr6 (24-298)||(29882094-29882370)
chr6 (24-298)||(29909250-29909526)
chr6 (24-298)||(29928932-29929208)
chr6 (19-298)||(24263811-24264092)
chr6 (24-298)||(24272011-24272287)
chr6 (19-288)||(29886966-29887237)
chr6 (22-196)||(29078288-29078464)
chr6 (177-298)||(29889179-29889300)
chr6 (67-294)||(29876488-29876715)
chr6 (19-152)||(30118800-30118935)
chr6 (19-128)||(30060221-30060332)
chr6 (22-298)||(24886579-24886861)
chr6 (19-118)||(29889569-29889670)
chr6 (195-267)||(24730545-24730617)
chr6 (19-123)||(29946271-29946377)
chr6 (24-136)||(30127119-30127233)
chr6 (208-281)||(24890496-24890569)
chr6 (192-301)||(15727402-15727511)
chr6 (184-250)||(30154207-30154273)
chr6 (67-250)||(29953803-29953986)
chr6 (184-250)||(24884847-24884913)
chr6 (208-298)||(31000188-31000278)
chr6 (73-269)||(30053115-30053311)
chr6 (22-249)||(25450826-25451055)
chr6 (184-250)||(29950123-29950189)
chr6 (184-250)||(30149234-30149300)
chr6 (184-253)||(30028842-30028911)
chr6 (182-298)||(30577992-30578108)
[»] scaffold0054 (1 HSPs)
scaffold0054 (19-301)||(53655-53939)
[»] scaffold0573 (1 HSPs)
scaffold0573 (19-296)||(3798-4077)
[»] scaffold0237 (1 HSPs)
scaffold0237 (24-288)||(22012-22278)
[»] chr2 (1 HSPs)
chr2 (19-294)||(15062935-15063212)
[»] chr3 (4 HSPs)
chr3 (19-298)||(24219294-24219575)
chr3 (192-301)||(16350706-16350815)
chr3 (183-280)||(33997617-33997714)
chr3 (184-224)||(11991045-11991085)
[»] chr1 (6 HSPs)
chr1 (67-268)||(10129826-10130027)
chr1 (192-245)||(4260551-4260604)
chr1 (192-245)||(4264173-4264226)
chr1 (186-301)||(41315925-41316040)
chr1 (23-128)||(4260380-4260487)
chr1 (23-128)||(4264002-4264109)
[»] scaffold0014 (3 HSPs)
scaffold0014 (65-275)||(137056-137266)
scaffold0014 (179-301)||(121692-121814)
scaffold0014 (184-224)||(140031-140071)
[»] scaffold0019 (1 HSPs)
scaffold0019 (184-301)||(126349-126466)
[»] scaffold0051 (1 HSPs)
scaffold0051 (79-223)||(43406-43550)
[»] scaffold0429 (1 HSPs)
scaffold0429 (184-223)||(5930-5969)
[»] scaffold0654 (1 HSPs)
scaffold0654 (199-297)||(1461-1559)
[»] scaffold0308 (1 HSPs)
scaffold0308 (193-299)||(8653-8759)
[»] scaffold0177 (1 HSPs)
scaffold0177 (199-297)||(27014-27111)
[»] chr7 (1 HSPs)
chr7 (184-245)||(3642749-3642810)
[»] scaffold0652 (1 HSPs)
scaffold0652 (179-224)||(1507-1552)
[»] scaffold0086 (1 HSPs)
scaffold0086 (184-301)||(31531-31648)
[»] scaffold1840 (1 HSPs)
scaffold1840 (181-245)||(1121-1185)


Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 43)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 29894493 - 29894209
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29894493 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 29894394  T
Q  117 caagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 216  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29894393 caagatattgtaactttgaatatcaggattcactcccctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 29894294  T
Q  217 tccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttcatct 301  Q
    ||||||||||||  ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29894293 tccattaaagagcaataggtaacaacattaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttcatct 29894209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 29084958 - 29084674
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttc--taaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    |||||||||| ||||||| ||||||||| | ||||  |||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  29084958 aattgtaagtcaccacattaggaataatgtttttgcaatgcatttcattaaagagattcatagctttatcgacctttttaatcttacaaaacccattaat 29084859  T
Q  117 caagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 216  Q
    |||||||||||||||  ||||||||||||||||||| |  |||| ||||||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  29084858 caagatattgtaactgcgaatatcaggattcactccgccttgagccatagtgttgaatatactcttagccgtattcacttctttaactaggcaatatcca 29084759  T
Q  217 tccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttcatct 301  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29084758 tccattaaagagttataagtaacaacatcaggtatgatgccttgtttcatcatcatagcaaacacagttttaccttctttcatct 29084674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 29099280 - 29098999
Alignment:
Q  22 tgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaa 119  Q
    |||||||||| |||||||||||||| | |||| |||||||||||  |||||||||||| |||||||| | ||||||||||||||||||||| | |||||     
T  29099280 tgtaagttacgacatcaggaataatgtttttgcgatgcatttctttaaagagattcatggcttcatcaaactttttaatcttacaaaacccgttaatcat 29099181  T
Q  120 gatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatccatcc 219  Q
    |||| ||||||| |||||||||||||||||||| | ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29099180 gatactgtaactctgaatatcaggattcactcccccctgagccatagtgttgaatatactcttagccttattcacttctttaactaggcaatatccatcc 29099081  T
Q  220 attaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttcatct 301  Q
    |||||||||||||||||||||| || |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29099080 attaaagagttataagtaacaaaattaggtttgatgccttgtttcatcatcatatcaaacacagttttaccttctttcatct 29098999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 29116198 - 29115917
Alignment:
Q  22 tgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaa 119  Q
    |||||||||| |||||||||||||| | |||| |||||||||||  |||||||||||| |||||||| | ||||||||||||||||||||| | |||||     
T  29116198 tgtaagttacgacatcaggaataatgtttttgcgatgcatttctttaaagagattcatggcttcatcaaactttttaatcttacaaaacccgttaatcat 29116099  T
Q  120 gatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatccatcc 219  Q
    |||| ||||||| |||||||||||||||||||| | ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29116098 gatactgtaactctgaatatcaggattcactcccccctgagccatagtgttgaatatactcttagccttattcacttctttaactaggcaatatccatcc 29115999  T
Q  220 attaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttcatct 301  Q
    |||||||||||||||||||||| || |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29115998 attaaagagttataagtaacaaaattaggtttgatgccttgtttcatcatcatatcaaacacagttttaccttctttcatct 29115917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 29073700 - 29073419
Alignment:
Q  22 tgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaa 119  Q
    ||||||| ||||||| ||||||||| | ||||  |||||||| |  |||||||||||| |||||||| ||||||||||||||||||||||| | |||||     
T  29073700 tgtaagtcaccacattaggaataatgtttttgcaatgcatttttttaaagagattcatggcttcatcaacctttttaatcttacaaaacccgttaatcat 29073601  T
Q  120 gatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatccatcc 219  Q
    |||||||||||| ||| |||||||||||||||| | ||||| ||||||||  |||||||| |||||||||||||||| ||||||||||||||||||||||    
T  29073600 gatattgtaactctgagtatcaggattcactcccccctgagccatagtgttgaatatactattagccttattcacttgtttaactaggcaatatccatcc 29073501  T
Q  220 attaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttcatct 301  Q
    |||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29073500 attaaagagcaataagtaacaacattaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttcatct 29073419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 29106273 - 29105992
Alignment:
Q  22 tgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaa 119  Q
    ||||||| ||||||| ||||||||| | ||||  |||||||| |  |||||||||||| |||||||| ||||||||||||||||||||||| | |||||     
T  29106273 tgtaagtcaccacattaggaataatgtttttgcaatgcatttttttaaagagattcatggcttcatcaacctttttaatcttacaaaacccgttaatcat 29106174  T
Q  120 gatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatccatcc 219  Q
    |||||||||||| ||| |||||||||||||||| | ||||| ||||||||  |||||||| |||||||||||||||| ||||||||||||||||||||||    
T  29106173 gatattgtaactctgagtatcaggattcactcccccctgagccatagtgttgaatatactattagccttattcacttgtttaactaggcaatatccatcc 29106074  T
Q  220 attaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttcatct 301  Q
    |||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29106073 attaaagagcaataagtaacaacattaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttcatct 29105992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 29898017 - 29897736
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    ||||||||||||||||||||||||| |  | | |   ||||||||||  |||||||||||| |||||||||  | ||||| ||||||||||||||| |||    
T  29898017 aattgtaagttaccacatcaggaattagctttctacaatgcatttcttcaaagagattcatggcttcatcggtcattttactcttacaaaacccattaat 29897918  T
Q  117 caagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 216  Q
    ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  29897917 caagatattgtaactgtgaatatcaggattcactcctccctgagccatagtgttgaatatactcttagccttattcacttctttaactaggcaatatcca 29897818  T
Q  217 tccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 298  Q
    |||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  29897817 tccattaaagagttataagtaaaaacattaggtttaatgtcttgtttcatcatcatagcaaacacatttttagcttctttca 29897736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 29348657 - 29348938
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    |||||||||||||||||||||||||||| | ||||  ||||||||||  |||||||||||| |||||||| ||||||||||||||||||||||| | |||    
T  29348657 aattgtaagttaccacatcaggaataatgtttttgcaatgcatttctttaaagagattcatggcttcatcaacctttttaatcttacaaaacccgttaat 29348756  T
Q  117 caagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 216  Q
    || ||||||||| || |||| || || | ||||||| | ||||| ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||    
T  29348757 catgatattgtagctctgaacattagcagtcactcccccctgagccatagtgttgaatatactcttagccttattcacttgtttaactaggcaatatcca 29348856  T
Q  217 tccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 298  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  29348857 tccattaaagagcaataagtaacaacatcaggtttaatgccttgtttcatcatcatagctaacacatttttagcttctttca 29348938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 29366480 - 29366761
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    |||||||||||||||||||||||||||| |  |||  ||||||||||  |||||||||||| |||||||||||||||||||||||||||||||| | |||    
T  29366480 aattgtaagttaccacatcaggaataatgttattgcaatgcatttctttaaagagattcatggcttcatcgacctttttaatcttacaaaacccgtgaat 29366579  T
Q  117 caagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 216  Q
    || |||| |||| || ||||||| |||||||||||| |||||||| |||||||  ||||||   ||||||||||| |||||||||||||||||||||| |    
T  29366580 catgatactgtagctgtgaatattaggattcactcccctctgagatatagtgttgaatatatgtttagccttattgacttctttaactaggcaatatcta 29366679  T
Q  217 tccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 298  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | |||| ||||| |||||||||    
T  29366680 tccattaaagagttataagtaaaaacgtcaggtttaatgccttgtttcatcatcatagctagcacatttttagcttctttca 29366761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 29835155 - 29834873
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    |||||||||||||||||||||||||||| | | ||  ||||||||||  |||||||||||| ||||||||   | ||||||||||||||| ||||| |||    
T  29835155 aattgtaagttaccacatcaggaataatttttctgcaatgcatttcttcaaagagattcatggcttcatccgtcattttaatcttacaaagcccattaat 29835056  T
Q  117 caagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 216  Q
    ||||||| ||||||| |||||||||||||||||||| | ||||| ||| ||||  ||||||||||| ||||||||||||| |||||||||||||||||||    
T  29835055 caagatactgtaactgtgaatatcaggattcactcccccctgagccattgtgttgaatatactcttcgccttattcacttttttaactaggcaatatcca 29834956  T
Q  217 tccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttcat 299  Q
    |||||||||| | |||||||||||||||  ||||| ||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  29834955 tccattaaagcgctataagtaacaacattgggtttcatgccttgtttcatcatcatagctaacacatttttagcttctttcat 29834873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 29866589 - 29866307
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    |||||||||||||||||||||||||||| | | ||  ||||||||||  |||||||||||| ||||||||   | ||||||||||||||| ||||| |||    
T  29866589 aattgtaagttaccacatcaggaataatttttctgcaatgcatttcttcaaagagattcatggcttcatccgtcattttaatcttacaaagcccattaat 29866490  T
Q  117 caagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 216  Q
    ||||||| ||||||| |||||||||||||||||||| | ||||| ||| ||||  ||||||||||| ||||||||||||| |||||||||||||||||||    
T  29866489 caagatactgtaactgtgaatatcaggattcactcccccctgagccattgtgttgaatatactcttcgccttattcacttttttaactaggcaatatcca 29866390  T
Q  217 tccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttcat 299  Q
    |||||||||| | |||||||||||||||  ||||| ||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  29866389 tccattaaagcgctataagtaacaacattgggtttcatgccttgtttcatcatcatagctaacacatttttagcttctttcat 29866307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 22 - 298
Target Start/End: Original strand, 29358041 - 29358319
Alignment:
Q  22 tgtaagttaccacatcaggaataatatgtttgtgatgcatttcta--aagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaa 119  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||   |  || | ||| |||||||| | | ||||||||||||||||||||| ||||||    
T  29358041 tgtaagttaccacgttaggaataatttgtttgtgatgcatttctttgagtagttccatggcttcatccatcattttaatcttacaaaacccattaatcaa 29358140  T
Q  120 gatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatccatcc 219  Q
    |||| ||||||| |||||||||||| |||||||   ||||| ||||||||  ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  29358141 gatactgtaactctgaatatcaggactcactcccaactgagccatagtgttgaatatactcttagccttattcacttgtttaactaggaaatatccatcc 29358240  T
Q  220 attaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 298  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||    
T  29358241 attaaagagttataagtaacaacgccaggtttaatgccttgtatcatcatcatagctaacacatttttagcttctttca 29358319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 39 - 298
Target Start/End: Complemental strand, 29903180 - 29902915
Alignment:
Q  39 ggaataatatgtttgtgatgcatttcta--aagagattcatagcttcatcgacctttttaatcttacaaaaccc----atcaatcaagatattgtaactt 132  Q
    |||| ||| |||||| |||||||||||   || || ||||| |||||||| ||| |||||||||||||||||||    || ||||| ||| ||||| ||     
T  29903180 ggaaaaatttgtttgcgatgcatttctctgaaaagtttcatggcttcatccaccattttaatcttacaaaacccgttaattaatcatgatgttgtagctg 29903081  T
Q  133 tgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatccatccattaaagagttat 232  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  29903080 tgaatatcaggattcactcccctctgagacatagtgtttaatatactcttagccttattcacttctttaactatgcagtatccatccattaaagagttat 29902981  T
Q  233 aagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 298  Q
    |||||||||| |||||||| ||||||||||||||||||||||| |||||| ||||| |||||||||    
T  29902980 aagtaacaacgtcaggtttgatgccttgtttcatcatcatagctaacacatttttagcttctttca 29902915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 28926606 - 28926885
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    |||||||||||||||||| ||||||||| | | ||  ||||||||||  |||||||||||| ||| |||||  | ||||||||||||||||||||| |||    
T  28926606 aattgtaagttaccacattaggaataatttttctgcaatgcatttcttcaaagagattcatggctgcatcggtcattttaatcttacaaaacccattaat 28926705  T
Q  117 caagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 216  Q
    ||||||||||||||| |||||||||||||||||||| | ||||| |||| |||  ||||||||||||||||| |||||||||||||| ||||||||||||    
T  28926706 caagatattgtaactctgaatatcaggattcactcccccctgagccatattgttgaatatactcttagccttgttcacttctttaacaaggcaatatcca 28926805  T
Q  217 tccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttcttt 296  Q
    |||||||||||| ||||||||||||| | |||||| |  |||| ||||||||||  |||||||||| ||||| |||||||    
T  28926806 tccattaaagagctataagtaacaacgttaggtttgaaaccttttttcatcatcgcagcaaacacatttttagcttcttt 28926885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 29905579 - 29905300
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    ||||||||||||||||||||||||| |  | | |   ||||||||||  ||||||||| || |||||||| ||||||||||||||||||||||||| |||    
T  29905579 aattgtaagttaccacatcaggaattaattttctacaatgcatttcttcaaagagatttatggcttcatcaacctttttaatcttacaaaacccattaat 29905480  T
Q  117 caagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 216  Q
    |||||||||||||||||||||| |||||||||||||   ||||| ||||||||  ||||||||||||||||||||||||||||||| || ||||||||||    
T  29905479 caagatattgtaactttgaatagcaggattcactccctcctgagccatagtgttgaatatactcttagccttattcacttctttaagtaagcaatatcca 29905380  T
Q  217 tccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttcttt 296  Q
    |||||||||||||||||||||||||  | |||||| |  |||| ||||||||| | | |||||||| ||||| |||||||    
T  29905379 tccattaaagagttataagtaacaaagttaggtttgaaaccttttttcatcataacaacaaacacatttttagcttcttt 29905300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 29882370 - 29882094
Alignment:
Q  24 taagttaccacatcaggaataatatgtttgtgatgcatttcta--aagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaaga 121  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||   || || ||||| |||||||| ||| |||||||||||||||| |||| ||||| ||    
T  29882370 taagttatcacatcaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaaaatccattaatcatga 29882271  T
Q  122 tattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatccatccat 221  Q
    || |||| || |||| || || | ||||||| || |||||||||||||  ||||||||||  ||||| |||||||| || || || ||||||||||||||    
T  29882270 tactgtagctctgaacattagcagtcactcccctatgagacatagtgttgaatatactctcggccttgttcacttcatttaccagacaatatccatccat 29882171  T
Q  222 taaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 298  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  29882170 taaagagctgtaagtaacaacatcaggtttaatgccttgtttcatcatcatagctaacacatttttagcttctttca 29882094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 29909526 - 29909250
Alignment:
Q  24 taagttaccacatcaggaataatatgtttgtgatgcatttcta--aagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaaga 121  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||   || || ||||| |||||||| ||| |||||||||||||||| |||| ||||| ||    
T  29909526 taagttatcacatcaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaaaatccattaatcatga 29909427  T
Q  122 tattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatccatccat 221  Q
    || |||| || |||| || || | ||||||| || |||||||||||||  ||||||||||  ||||| |||||||| || || || ||||||||||||||    
T  29909426 tactgtagctctgaacattagcagtcactcccctatgagacatagtgttgaatatactctcggccttgttcacttcatttaccagacaatatccatccat 29909327  T
Q  222 taaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 298  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  29909326 taaagagctgtaagtaacaacatcaggtttaatgccttgtttcatcatcatagctaacacatttttagcttctttca 29909250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 24 - 298
Target Start/End: Complemental strand, 29929208 - 29928932
Alignment:
Q  24 taagttaccacatcaggaataatatgtttgtgatgcatttcta--aagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaaga 121  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||   || || ||||| |||||||| ||| |||||||||||||||| |||| ||||| ||    
T  29929208 taagttatcacatcaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaaaatccattaatcatga 29929109  T
Q  122 tattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatccatccat 221  Q
    || |||| || | |  || || | ||||||| || |||||||||||||  ||||||||||  ||||| |||||||| || || || ||||||||||||||    
T  29929108 tactgtagctcttagcattagcagtcactcccctatgagacatagtgttgaatatactctcggccttgttcacttcatttacaagacaatatccatccat 29929009  T
Q  222 taaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 298  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||    
T  29929008 taaagagctgtaagtaacaacatcaggtttaatgccttgtttcatcatcatagctaacacatttttagcttctttca 29928932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 24263811 - 24264092
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttcta--aagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    |||| ||||||| ||||| ||||| ||| ||||||||||||||||||   || || ||||| |||| ||| ||| |||||||||||||||| |||| |||    
T  24263811 aattataagttatcacattaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttgatccaccattttaatcttacaaaatccattaat 24263910  T
Q  117 caagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 216  Q
    ||  |||||||| ||  ||| |  || | ||||||| || ||||||||||||| |||||||||||| ||| | |||||||| || || || |||||||||    
T  24263911 cacaatattgtagctccgaacagtagcagtcactcccctatgagacatagtgtttaatatactcttggccatgttcacttcatttaccagacaatatcca 24264010  T
Q  217 tccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 298  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||| || ||||| |||||||||    
T  24264011 tccattaaagagttataagtaacaatgtcaggtttaatgccttgtttcatcatcatagctaacccatttttagcttctttca 24264092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 24 - 298
Target Start/End: Original strand, 24272011 - 24272287
Alignment:
Q  24 taagttaccacatcaggaataatatgtttgtgatgcatttcta--aagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaaga 121  Q
    ||||||| ||||| ||||| ||| ||||||||||||||||||   || || ||||| |||| ||| ||| |||||||||||||||| | || ||||| ||    
T  24272011 taagttatcacattaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttgatccaccattttaatcttacaaaatctattaatcatga 24272110  T
Q  122 tattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatccatccat 221  Q
    || |||| ||  ||| || ||   ||||||| || |||||||||||||  ||||||||||| ||||| |||||||| || || || ||||||| ||||||    
T  24272111 tactgtagctccgaacattagcggtcactcccctatgagacatagtgttgaatatactcttggccttgttcacttcatttaccagacaatatcgatccat 24272210  T
Q  222 taaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 298  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||||| |||||||||    
T  24272211 taaagagttataagtaacaacgtcaggtttaatgccttgtttcatcatcatagctaacccatttttagcttctttca 24272287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 29887237 - 29886966
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    ||||||||||||||||||||||||| |  | | |   ||||||||||  |||||||||||| |||||||||  | |||||||||||||||| |||| |||    
T  29887237 aattgtaagttaccacatcaggaattagttttctacaatgcatttcttcaaagagattcatggcttcatcggtcattttaatcttacaaaatccattaat 29887138  T
Q  117 caagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 216  Q
    || ||||||||| ||   || || || | ||||||| ||  |||||||||||   ||||||| ||| || || |||||||| ||||||||||||||||||    
T  29887137 catgatattgtagctccaaacattagcagtcactcccctaagagacatagtgctgaatatacccttggcattgttcacttcattaactaggcaatatcca 29887038  T
Q  217 tccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagtttta 288  Q
    |||||||||||| ||||||||||| ||| ||| || ||||||||||||||||||||||| |||||| |||||    
T  29887037 tccattaaagagctataagtaacagcattaggattgatgccttgtttcatcatcatagctaacacattttta 29886966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 22 - 196
Target Start/End: Complemental strand, 29078464 - 29078288
Alignment:
Q  22 tgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaa 119  Q
    ||||||| ||||||| ||||||||| | ||||  |||||||| |  |||||||||||| |||||||| ||||||||||||||||||||||| | |||||     
T  29078464 tgtaagtcaccacattaggaataatgtttttgcaatgcatttttttaaagagattcatggcttcatcaacctttttaatcttacaaaacccgttaatcat 29078365  T
Q  120 gatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcactt 196  Q
    |||||||||||| ||| |||||||||||||||| | ||||| ||||||||  |||||||| ||||||||||||||||    
T  29078364 gatattgtaactctgagtatcaggattcactcccccctgagccatagtgttgaatatactattagccttattcactt 29078288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 177 - 298
Target Start/End: Complemental strand, 29889300 - 29889179
Alignment:
Q  177 actcttagccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagca 276  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| || ||||||||||||||||     
T  29889300 actcttatccttattcacttgtttaactaggcaatatccatccattaaagagttataagtaacaacattaagtttgatgtctcgtttcatcatcatagct 29889201  T
Q  277 aacacagttttaccttctttca 298  Q
    |||||| ||||| |||||||||    
T  29889200 aacacatttttagcttctttca 29889179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 67 - 294
Target Start/End: Complemental strand, 29876715 - 29876488
Alignment:
Q  67 aagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcctctctgagacatag 166  Q
    ||||||||||| |||||||| | | |||||| ||||||||| |||| ||||| |||| |||| ||  ||| ||  | | ||||||| ||||||  |||||    
T  29876715 aagagattcattgcttcatccatcattttaaccttacaaaatccattaatcatgatactgtagctccgaacatttgcagtcactcccctctgaaccatag 29876616  T
Q  167 tgtataatatactcttagccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcat 266  Q
    |||  |||||| |||||||||| | |||||||||||| || ||||||||||||||||||||||||||||||| || ||||||||| |  |||| ||||||    
T  29876615 tgttgaatatattcttagccttgtccacttctttaaccagacaatatccatccattaaagagttataagtaataatatcaggtttcacaccttctttcat 29876516  T
Q  267 catcatagcaaacacagttttaccttct 294  Q
    ||||| |||||  |||| ||||||||||    
T  29876515 catcacagcaacaacagctttaccttct 29876488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 30118800 - 30118935
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    ||||||||||||||||||||||||| |  | | |   ||||||||||  ||||||||| || |||||||||||||||||||||||||||||||||| |||    
T  30118800 aattgtaagttaccacatcaggaattaattttctacaatgcatttcttcaaagagatttatggcttcatcgacctttttaatcttacaaaacccattaat 30118899  T
Q  117 caagatattgtaactttgaatatcaggattcactcc 152  Q
    |||||||||||||||||||||| |||||||||||||    
T  30118900 caagatattgtaactttgaatagcaggattcactcc 30118935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 30060221 - 30060332
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    ||||||| |||||||||||||||||||| | ||||  ||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  30060221 aattgtatgttaccacatcaggaataatgtttttgcaatgcatttcttcaaagagattcatggcttcatcgacctttttaatcttacaaaacccattaat 30060320  T
Q  117 caagatattgta 128  Q
    ||  ||||||||    
T  30060321 cattatattgta 30060332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 298
Target Start/End: Original strand, 24886579 - 24886861
Alignment:
Q  22 tgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaa 119  Q
    ||||||||||||||||||||||| | | | |   ||||||||||  | ||||||| || |||||||| | | |||||| ||| ||||| |||| ||||||    
T  24886579 tgtaagttaccacatcaggaatattttttctacaatgcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaa 24886678  T
Q  120 gatattgtaactttgaatatcagg----attcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcc 215  Q
    |||| |||| || |||| || |||    |  |||||| || ||   ||||||||  ||||||  ||| ||| | |||| ||||||||||| |||||||||    
T  24886679 gatagtgtagctatgaacattaggtaggaaccactccactttggttcatagtgttgaatatatccttggccatgttcatttctttaactaagcaatatcc 24886778  T
Q  216 atccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 298  Q
    || |||||||| ||||||||| ||||||  |||||| ||||| ||||||||||||||||  ||||||  |||| |||||||||    
T  24886779 attcattaaagtgttataagtgacaacactaggtttgatgccgtgtttcatcatcatagataacacatatttagcttctttca 24886861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 29889670 - 29889569
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    |||||||||| ||||||| ||||||||| | ||||  ||||||||||  |||||||||||| ||||||||||| |||||||||||||||||||||| |||    
T  29889670 aattgtaagtcaccacattaggaataatgtttttgcaatgcatttctttaaagagattcatggcttcatcgacttttttaatcttacaaaacccattaat 29889571  T
Q  117 ca 118  Q
    ||    
T  29889570 ca 29889569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 24730617 - 24730545
Alignment:
Q  195 ttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatc 267  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||    
T  24730617 ttctttaactaagcaatatccatccattaaagagttataagtaacaacatcaagtataatgtcttttttcatc 24730545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 29946377 - 29946271
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    |||||||||||||||||| ||||| ||| ||||||  ||||||||||  |||||||||||| |||||||| ||| |||||||||||||||| |||| |||    
T  29946377 aattgtaagttaccacattaggaaaaatttgtttgcaatgcatttcttcaaagagattcatggcttcatccaccattttaatcttacaaaatccattaat 29946278  T
Q  117 caagata 123  Q
    || ||||    
T  29946277 catgata 29946271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 30127119 - 30127233
Alignment:
Q  24 taagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaaga 121  Q
    ||||||||||||||||||||||| | ||||   |||||||||  ||||||||| || |||||| | ||| ||||||||||||||||||||| ||||| ||    
T  30127119 taagttaccacatcaggaataatttttttgcattgcatttcttcaaagagattaatggcttcacccacccttttaatcttacaaaacccattaatcatga 30127218  T
Q  122 tattgtaactttgaa 136  Q
    ||||||| |||||||    
T  30127219 tattgtagctttgaa 30127233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 24890496 - 24890569
Alignment:
Q  208 caatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacac 281  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||||| ||||| |||||    
T  24890496 caatatccatccattaaagagttataagtaacaacatcaggttttatgtcgtctttcatcattatagctaacac 24890569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 15727402 - 15727511
Alignment:
Q  192 cacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttacct 291  Q
    ||||||||||||||||||||| ||||||||||| || || || ||||||||||||||||  |  |||| ||||||||||| ||| | |||| ||||| ||    
T  15727402 cacttctttaactaggcaataaccatccattaatgaattgtatgtaacaacatcaggttccacaccttctttcatcatcacagctatcacatttttagct 15727501  T
Q  292 tctttcatct 301  Q
    ||||| ||||    
T  15727502 tctttgatct 15727511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 30154273 - 30154207
Alignment:
Q  184 gccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtt 250  Q
    |||||||||||||||||||| | | |||| |||||||| ||||| ||||||||||||||||||||||    
T  30154273 gccttattcacttctttaaccaagaaatacccatccatcaaagaattataagtaacaacatcaggtt 30154207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 250
Target Start/End: Original strand, 29953803 - 29953986
Alignment:
Q  67 aagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcctctctgagacatag 166  Q
    |||||||||  ||||||||  ||| ||||| ||||||| || || | ||||| || |||||| || ||||  |||||| ||||||| || ||||  ||||    
T  29953803 aagagattcgcagcttcattcaccattttattcttacataatccgttaatcatgacattgtagctatgaagttcaggagtcactcccctttgagcaatag 29953902  T
Q  167 tgtataatatactcttagccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtt 250  Q
    |||  ||||||    | ||||| || ||||||||||||||| |||| |||||||| |||||  ||||||||||||||| |||||    
T  29953903 tgttgaatatatatgtggccttgttgacttctttaactaggaaatacccatccatcaaagaagtataagtaacaacattaggtt 29953986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 24884913 - 24884847
Alignment:
Q  184 gccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtt 250  Q
    ||||| |||||||||||||| | | |||| ||||||||||||||  ||||||||||||||| |||||    
T  24884913 gccttgttcacttctttaaccaagaaataaccatccattaaagaagtataagtaacaacattaggtt 24884847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 31000188 - 31000278
Alignment:
Q  208 caatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 298  Q
    ||||||||||||||||||||| ||||||||||||||  ||| || ||| | | ||| |||||||| || || ||| ||||| |||||||||    
T  31000188 caatatccatccattaaagagctataagtaacaacacgaggctttatgtcgtctttgatcatcatggctaatacatttttagcttctttca 31000278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 269
Target Start/End: Complemental strand, 30053311 - 30053115
Alignment:
Q  73 ttcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtata 172  Q
    |||| ||||||||| ||| ||||| ||||||| || |||| ||||| || | |||| || |||| || |||| ||||||| ||  |||| |||||||  |    
T  30053311 ttcacagcttcatccaccattttattcttacataatccattaatcatgacaatgtagctatgaacattaggagtcactccccttagagaaatagtgttga 30053212  T
Q  173 atatactcttagccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcat 269  Q
    ||| |   || ||||| || |||||||| || | | |||| |||||||| |||||  ||||||||||||||| |||||  | ||||||||| |||||    
T  30053211 atacatgtttggccttgttgacttcttttaccaagaaatacccatccatcaaagaagtataagtaacaacattaggttccacgccttgttttatcat 30053115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 25451055 - 25450826
Alignment:
Q  22 tgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaa 119  Q
    |||||||||||||||||||||  || ||||||   |||||||||  ||| || ||| | |||||||| ||| ||||||||||||||||   |  |||||     
T  25451055 tgtaagttaccacatcaggaaatatttgtttggactgcatttcttcaaaaagtttcctggcttcatccaccattttaatcttacaaaatttactaatcat 25450956  T
Q  120 gatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatccatcc 219  Q
    |||| |||| ||  |||  |||  | ||||||| || |||| |||| | |  ||||| ||||| ||||  |||||||| |||||||| |||||||||| |    
T  25450955 gatagtgtagctaagaacgtcaaaagtcactcccctttgagtcatacttttgaatattctcttggcctcgttcacttcattaactagacaatatccatac 25450856  T
Q  220 attaaagagttataagtaacaacatcaggt 249  Q
    | |||| || ||||||| | ||||| ||||    
T  25450855 aataaacagctataagtgataacattaggt 25450826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 29950123 - 29950189
Alignment:
Q  184 gccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtt 250  Q
    ||||| || ||||||||||| | | |||| ||||||||||||||  |||||||||||| ||||||||    
T  29950123 gccttgttgacttctttaaccaagaaataaccatccattaaagaactataagtaacaatatcaggtt 29950189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 30149300 - 30149234
Alignment:
Q  184 gccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtt 250  Q
    ||||| || ||||||||||| | | |||| ||||||||||||||  |||||||||||| ||||||||    
T  30149300 gccttgttgacttctttaaccaagaaataaccatccattaaagaactataagtaacaatatcaggtt 30149234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 253
Target Start/End: Complemental strand, 30028911 - 30028842
Alignment:
Q  184 gccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaa 253  Q
    |||||||||||||| || ||| |  |||| ||||||||||||||  ||||||||||||||| | ||||||    
T  30028911 gccttattcacttcattgacttgaaaatacccatccattaaagaactataagtaacaacattaagtttaa 30028842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 298
Target Start/End: Original strand, 30577992 - 30578108
Alignment:
Q  182 tagccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacac 281  Q
    ||||||| ||| ||| |||||| | | |||| ||||| ||||||||  || ||||||||||||||||||| |  | |||||| ||||| | ||| || ||    
T  30577992 tagccttgttcgcttttttaaccaagaaatacccatctattaaagaactacaagtaacaacatcaggtttcacactttgttttatcataacagccaaaac 30578091  T
Q  282 agttttaccttctttca 298  Q
    | |||||||| ||||||    
T  30578092 acttttacctcctttca 30578108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 53655 - 53939
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttcta--aagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||| |||| ||| |||||||||||||||||||| |||| |||    
T  53655 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttctatgaagagtttcatggctttatccacctttttaatcttacaaaatccattaat 53754  T
Q  117 caagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 216  Q
    || ||||||||| || |||| || || | ||||||| ||||||||||||||||  |||||  |||||||||||||||||| |||||||||||||||||||    
T  53755 catgatattgtagctatgaacattagcagtcactcccctctgagacatagtgttgaatatcttcttagccttattcacttgtttaactaggcaatatcca 53854  T
Q  217 tccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttcatct 301  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53855 tccattaaagagcaataagtaacaacattaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttcatct 53939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 4077 - 3798
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    |||||||||||||||||| ||||||||| | | ||  ||||||||||  |||||||||||| ||| |||||  | ||||||||||||||||||||| |||    
T  4077 aattgtaagttaccacattaggaataatttttctgcaatgcatttcttcaaagagattcatggctgcatcggtcattttaatcttacaaaacccattaat 3978  T
Q  117 caagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 216  Q
    ||||||||||||||| |||||||||||||||||||| | ||||| |||| |||  ||||||||||||||||| |||||||||||||| ||||||||||||    
T  3977 caagatattgtaactctgaatatcaggattcactcccccctgagccatattgttgaatatactcttagccttgttcacttctttaacaaggcaatatcca 3878  T
Q  217 tccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttcttt 296  Q
    |||||||||||| ||||||||||||| | |||||| |  |||| ||||||||||  |||||||||| ||||| |||||||    
T  3877 tccattaaagagctataagtaacaacgttaggtttgaaaccttttttcatcatcgcagcaaacacatttttagcttcttt 3798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 22278 - 22012
Alignment:
Q  24 taagttaccacatcaggaataatatgtttgtgatgcatttcta--aagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaaga 121  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||   || || ||||| |||||||| ||| |||||||||||||||| |||| ||||| ||    
T  22278 taagttatcacatcaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttcatccaccattttaatcttacaaaatccattaatcatga 22179  T
Q  122 tattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatccatccat 221  Q
    ||||||| || |||| || || | |||| || || |||||||||||||  ||||||||||  ||||| |||||||| || || || ||||||||||||||    
T  22178 tattgtagctctgaacattagcagtcacacccctatgagacatagtgttgaatatactctcggccttgttcacttcatttaccagacaatatccatccat 22079  T
Q  222 taaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagtttta 288  Q
    ||||||| | ||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||    
T  22078 taaagagctgtaagtaacaacatcaggtttaatgctttgtttcatcatcatagctaacacattttta 22012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 15062935 - 15063212
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    ||||||||||||||||||  |||| ||| |||||   ||||||||||  |||||| ||||| |||||||| ||| |||||||||||||||| |||| |||    
T  15062935 aattgtaagttaccacatttggaaaaatttgtttacaatgcatttcttcaaagagcttcatggcttcatctaccattttaatcttacaaaatccattaat 15063034  T
Q  117 caagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 216  Q
    || |||| |||| ||   ||  |||||| | ||||| || |||| ||||  ||  |||| |||||| ||||| ||||||| |||||||| ||||||||||    
T  15063035 catgatactgtagctccaaacgtcaggagttactcccctttgagccataacgttgaataaactcttggccttgttcacttgtttaactaagcaatatcca 15063134  T
Q  217 tccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttct 294  Q
    |||||||||||||||||||||||||||||| |||| | |  || ||||||||||| ||| |||||| ||||| |||||    
T  15063135 tccattaaagagttataagtaacaacatcaagttttacgttttttttcatcatcacagctaacacatttttagcttct 15063212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 24219294 - 24219575
Alignment:
Q  19 aattgtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaat 116  Q
    ||||||| || |||||||| |||| ||| ||||||  ||||||||||  |||||| ||||| |||||||| ||| |||||||||||||||| |||  |||    
T  24219294 aattgtacgtcaccacatcgggaaaaatttgtttgcaatgcatttcttcaaagagtttcatggcttcatccaccattttaatcttacaaaatccactaat 24219393  T
Q  117 caagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatactcttagccttattcacttctttaactaggcaatatcca 216  Q
    || |||| ||||||| ||||  ||||||  ||||||  | |||| ||||||||  |||||||| |  ||||| ||||| || || || || |||||||||    
T  24219394 catgatactgtaactatgaacgtcaggagccactccaatttgagccatagtgttgaatatactttcggccttgttcacctcatttaccagacaatatcca 24219493  T
Q  217 tccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttca 298  Q
    | |||||||||||||||||||||||  | |||||| |   ||| ||||||||||| | |||||||| ||||| |||||||||    
T  24219494 ttcattaaagagttataagtaacaatgttaggttttacatcttttttcatcatcacaacaaacacatttttagcttctttca 24219575  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 16350815 - 16350706
Alignment:
Q  192 cacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttacct 291  Q
    |||||| |||||||||||||| ||||||||||| |  ||||| |||||||||  |||||  |  |||| ||||||||||| ||| | |||| ||||| ||    
T  16350815 cacttcattaactaggcaatacccatccattaatgtattatatgtaacaacagtaggttccacaccttctttcatcatcacagctatcacatttttagct 16350716  T
Q  292 tctttcatct 301  Q
    ||||| ||||    
T  16350715 tctttgatct 16350706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 280
Target Start/End: Complemental strand, 33997714 - 33997617
Alignment:
Q  183 agccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaaca 280  Q
    |||||| |||||||  ||||||| ||||||||||||||||| ||    ||||||||||||||  ||||| |  |||| ||||||||||||||| ||||    
T  33997714 agccttgttcacttgattaactaagcaatatccatccattatagcaccataagtaacaacattcggttttacaccttttttcatcatcatagccaaca 33997617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 11991085 - 11991045
Alignment:
Q  184 gccttattcacttctttaactaggcaatatccatccattaa 224  Q
    |||||||| ||||  ||||||||||||||||||||||||||    
T  11991085 gccttattaacttggttaactaggcaatatccatccattaa 11991045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 67 - 268
Target Start/End: Complemental strand, 10130027 - 10129826
Alignment:
Q  67 aagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcctctctgagacatag 166  Q
    |||||||  ||||||||||| ||| |||||||||||||||| |||| ||||| |||| |||||||||||| ||| | | ||||||| || || | ||| |    
T  10130027 aagagatcaatagcttcatccaccattttaatcttacaaaatccattaatcatgatactgtaactttgaacatcggcaatcactcccctttgggccatgg 10129928  T
Q  167 tgtataatatactcttagccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcat 266  Q
    |||  | ||||  || |||||| ||||||| |||||| || ||||||||||| |||||||| |||||||||||||| | |||||| | ||| | ||||||    
T  10129927 tgttgagtataacctcagccttgttcacttgtttaacaagacaatatccatctattaaagaattataagtaacaacgttaggttttacgccgtttttcat 10129828  T
Q  267 ca 268  Q
    ||    
T  10129827 ca 10129826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 4260551 - 4260604
Alignment:
Q  192 cacttctttaactaggcaatatccatccattaaagagttataagtaacaacatc 245  Q
    |||||| ||||| ||||||||||||| |||||||||| |||||| |||||||||    
T  4260551 cacttcattaacaaggcaatatccattcattaaagagctataagcaacaacatc 4260604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 4264173 - 4264226
Alignment:
Q  192 cacttctttaactaggcaatatccatccattaaagagttataagtaacaacatc 245  Q
    |||||| ||||| ||||||||||||| |||||||||| |||||| |||||||||    
T  4264173 cacttcattaacaaggcaatatccattcattaaagagctataagcaacaacatc 4264226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 301
Target Start/End: Complemental strand, 41316040 - 41315925
Alignment:
Q  186 cttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagtt 285  Q
    |||||||||||| ||||||||||||||||| |||||||  ||  | || ||||||||||  |||   |  || | ||||||||||||||| | |||| ||    
T  41316040 cttattcacttcattaactaggcaatatccctccattattgaagtgtaggtaacaacattcggtaatacaccatctttcatcatcatagctatcacactt 41315941  T
Q  286 ttaccttctttcatct 301  Q
    ||| ||||||||||||    
T  41315940 ttagcttctttcatct 41315925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 4260380 - 4260487
Alignment:
Q  23 gtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaag 120  Q
    |||||||||||| |||||||  || |||||| || ||||||||  |||||| || || |||||||| ||| |||| || ||||||||  ||| ||||| |    
T  4260380 gtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccaccattttcattttacaaaattcattaatcatg 4260479  T
Q  121 atattgta 128  Q
    ||||||||    
T  4260480 atattgta 4260487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 4264002 - 4264109
Alignment:
Q  23 gtaagttaccacatcaggaataatatgtttgtgatgcatttct--aaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaag 120  Q
    |||||||||||| |||||||  || |||||| || ||||||||  |||||| || || |||||||| ||| |||| || ||||||||  ||| ||||| |    
T  4264002 gtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccaccattttcattttacaaaattcattaatcatg 4264101  T
Q  121 atattgta 128  Q
    ||||||||    
T  4264102 atattgta 4264109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 275
Target Start/End: Complemental strand, 137266 - 137056
Alignment:
Q  65 taaagagattcatagcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcctctctgagacat 164  Q
    |||||||| ||| |||||||| |||| ||||||||||||| || |||| ||||| |||||| || || |||  |||||||  ||||||  |  |||  ||    
T  137266 taaagagactcaaagcttcattgaccattttaatcttacagaatccattaatcatgatattatagctctgagcatcaggagccactcccattcgagcaat 137167  T
Q  165 agtgtataatatactcttagccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttc 264  Q
    ||||  ||| | |   || |||||||||||||| |||||||||||||| ||||||||||| || || || ||||||||||| ||||| || | |  |||     
T  137166 agtgcttaaaacatgtttggccttattcacttcattaactaggcaatacccatccattaatgaattgtatgtaacaacatctggttttatacttcctttg 137067  T
Q  265 atcatcatagc 275  Q
    |||||||||||    
T  137066 atcatcatagc 137056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 301
Target Start/End: Original strand, 121692 - 121814
Alignment:
Q  179 tcttagccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaa 278  Q
    |||| |||||||||||||| ||| |||||||||| ||||||||||| |  ||||| |||||||||  ||| |  | ||||| ||||||||||| ||| |     
T  121692 tctttgccttattcacttcattatctaggcaatacccatccattaatgtattatatgtaacaacagtaggctccacgccttctttcatcatcacagctat 121791  T
Q  279 cacagttttaccttctttcatct 301  Q
    |||| ||||| ||||||| ||||    
T  121792 cacatttttagcttctttgatct 121814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 140071 - 140031
Alignment:
Q  184 gccttattcacttctttaactaggcaatatccatccattaa 224  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  140071 gccttatttacttcattaactaggcaatatccatccattaa 140031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 301
Target Start/End: Original strand, 126349 - 126466
Alignment:
Q  184 gccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacag 283  Q
    |||||||| ||||| |||||||||||||||||||||||||| || || || ||||||||||| ||  | |  | || ||||||||||| ||| | ||||     
T  126349 gccttattgacttcattaactaggcaatatccatccattaatgaattgtaggtaacaacatcgggcatcacacattctttcatcatcacagctatcacac 126448  T
Q  284 ttttaccttctttcatct 301  Q
    ||||| ||||||||||||    
T  126449 ttttagcttctttcatct 126466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 43406 - 43550
Alignment:
Q  79 gcttcatcgacctttttaatcttacaaaacccatcaatcaagatattgtaactttgaatatcaggattcactcctctctgagacatagtgtataatatac 178  Q
    ||||||| |||| |||||||||||||||| |||| ||||| |||||| || || |||  |||||||  ||||||  | ||||  ||||||  ||| | |     
T  43406 gcttcattgaccattttaatcttacaaaatccattaatcatgatattatagctctgagcatcaggaggcactcccatttgagtaatagtgcttaaaacat 43505  T
Q  179 tcttagccttattcacttctttaactaggcaatatccatccatta 223  Q
      || |||||||| ||||| |||||||||||||||||||||||||    
T  43506 gtttggccttattgacttcattaactaggcaatatccatccatta 43550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 5969 - 5930
Alignment:
Q  184 gccttattcacttctttaactaggcaatatccatccatta 223  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  5969 gccttattcacttcattaactaggcaatatccatccatta 5930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 297
Target Start/End: Original strand, 1461 - 1559
Alignment:
Q  199 ttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttc 297  Q
    |||||||||||||||||||||||||| ||    || ||||||||||| ||| | |  |||| ||||||||||||||| | |||| ||||| ||||||||    
T  1461 ttaactaggcaatatccatccattaatgaaccgtaggtaacaacatccggtatcacaccttctttcatcatcatagctatcacatttttagcttctttc 1559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 299
Target Start/End: Complemental strand, 8759 - 8653
Alignment:
Q  193 acttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttacctt 292  Q
    ||||| |||||||  ||||||||||||||||  ||  ||| ||||||||  || ||||| |  |||||||||| ||||||||| |||||| ||||| |||    
T  8759 acttcattaactaaacaatatccatccattagtgacgtatgagtaacaatgtctggtttcacaccttgtttcaccatcatagctaacacatttttagctt 8660  T
Q  293 ctttcat 299  Q
    |||||||    
T  8659 ctttcat 8653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 297
Target Start/End: Complemental strand, 27111 - 27014
Alignment:
Q  199 ttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacagttttaccttctttc 297  Q
    ||||||| |||||| |||||||||| |||| |||| ||||||| ||||||||  | ||||| ||||||||||| ||| |||||| |||||  |||||||    
T  27111 ttaactaagcaatacccatccattagagagctatatgtaacaa-atcaggttccacgccttctttcatcatcacagctaacacatttttagtttctttc 27014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 3642810 - 3642749
Alignment:
Q  184 gccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatc 245  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||  | || |||||||||||    
T  3642810 gccttattcacttcattaactagacaatatccatccattaatgaactgtaggtaacaacatc 3642749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 1507 - 1552
Alignment:
Q  179 tcttagccttattcacttctttaactaggcaatatccatccattaa 224  Q
    |||| |||||||||||||| ||| |||||||||| |||||||||||    
T  1507 tctttgccttattcacttcattagctaggcaatacccatccattaa 1552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 301
Target Start/End: Original strand, 31531 - 31648
Alignment:
Q  184 gccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatcaggtttaatgccttgtttcatcatcatagcaaacacag 283  Q
    ||||||||||||||  |||| |||||||| || |||||||| ||  |||| ||||||| |  |||||  | ||||| ||||||||||| ||| | ||||     
T  31531 gccttattcacttcaataaccaggcaatacccgtccattaatgaactatatgtaacaatagtaggttccacgccttctttcatcatcacagctatcacat 31630  T
Q  284 ttttaccttctttcatct 301  Q
    ||||| ||||||| ||||    
T  31631 ttttagcttctttgatct 31648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1840 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1840
Description:

Target: scaffold1840; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 1185 - 1121
Alignment:
Q  181 ttagccttattcacttctttaactaggcaatatccatccattaaagagttataagtaacaacatc 245  Q
    ||||||||||| ||||| ||||| || ||||||||||||||||| ||  | || |||||||||||    
T  1185 ttagccttattaacttcattaacaagacaatatccatccattaatgaactgtaggtaacaacatc 1121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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