View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_low_33 (Length: 218)
Name: NF16693_low_33
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 32875416 - 32875226
Alignment:
| Q |
21 |
actgcaacgctcaatttcgaccctgtaactcgagggtcccgtccaagagacacactcacattctcaacaggatatcctttttccttctctaaaccattga |
120 |
Q |
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| T |
32875416 |
actgcaacgctcaatttcgaccctgtaactcgagggtcacgtccaagagacacactcacattctcaacaggatatcctttttccttctctaaaccattga |
32875317 |
T |
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| Q |
121 |
taacccactccccaaaactctctgatattgcctcgacagcaggtggagtaaggtcgaccgttcttcctttctcaccttcctatgctactcc |
211 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |
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| T |
32875316 |
taacccactccccaaaactctctgatattgcctcaacagcaggtggagtaaggtcgaccgttcttcctttctcgccttccaatgcaactcc |
32875226 |
T |
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