View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_low_34 (Length: 215)
Name: NF16693_low_34
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 60 - 203
Target Start/End: Complemental strand, 9421508 - 9421365
Alignment:
| Q |
60 |
tgacatggtcaaaacccaattgtagcaggtgtgaagtagaagacaagatgtgtaaactgaaaagcaatggaactgaagacgagatagaatgttttgatcg |
159 |
Q |
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| T |
9421508 |
tgacatggtcaaaacccaattgtagcaggtgtgaagtagaagacaagatgtgtaaactgaaaaacaatggaactgaagacgagatagaatgttttgatcg |
9421409 |
T |
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| Q |
160 |
tcatcacaaacctactaagaagataattctatatgccacaggtt |
203 |
Q |
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| T |
9421408 |
tcatcacaaacctactaagaagataattctatatgccacaggtt |
9421365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 60 - 202
Target Start/End: Complemental strand, 9440081 - 9439939
Alignment:
| Q |
60 |
tgacatggtcaaaacccaattgtagcaggtgtgaagtagaagacaagatgtgtaaactgaaaagcaatggaactgaagacgagatagaatgttttgatcg |
159 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
9440081 |
tgacatggtcaaaacccaattgtagcaagtgtgaaatagaagggaagatgtgtaaactgaaaaacaatggaactgaagacgagatagaatgttttgaccg |
9439982 |
T |
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| Q |
160 |
tcatcacaaacctactaagaagataattctatatgccacaggt |
202 |
Q |
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| T |
9439981 |
tcatcacaaaccaactaaaaagatacttctatatgccacaggt |
9439939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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