View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_low_36 (Length: 201)
Name: NF16693_low_36
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 4284351 - 4284534
Alignment:
| Q |
1 |
ctacagtcagaaagacaaaaggcaccagttctatctattgaaaccatttcaacnnnnnnnggttttccacaaccaaaatcagtactataaacctcaaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4284351 |
ctacagtcagaaagacaaaaggcaccagttctatctattgaaaccatttcaactttttttggttttccacaaccaaaatcagtactataaacctcaaatt |
4284450 |
T |
|
| Q |
101 |
taggtgaaccagcagcaccaattgctttaacatcagcaattgcaagacctccaagtaacgatgaacacatattttcagctccat |
184 |
Q |
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| T |
4284451 |
taggtgaaccagcagcaccaattgctttaacatcagcaattgcaagacctccaagtaacgatgaacacatattttcagctccat |
4284534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 4297645 - 4297827
Alignment:
| Q |
1 |
ctacagtcagaaagacaaaaggcaccagttctatctattgaaaccatttcaacnnnnnnnggttttccacaaccaaaatcagtactataaacctcaaatt |
100 |
Q |
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||||| ||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
4297645 |
ctacaatcagaaagacaaaaggcaccaattctatctatagaaaccatttcaactttctttggttttccacatccaaaatcagtactataaacctcaaatt |
4297744 |
T |
|
| Q |
101 |
taggtgaaccagcagcaccaattgctttaacatcagcaattgcaagacctccaagtaacgatgaacacatattttcagctcca |
183 |
Q |
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| T |
4297745 |
taggtgaaccagcagtaccaattgttttaacatcagcaatggcaagaccttcaagtaacaatgaagaccaattttcagctcca |
4297827 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 5 - 164
Target Start/End: Original strand, 4257611 - 4257773
Alignment:
| Q |
5 |
agtcagaaagacaaaaggcaccagttctatctattgaaaccatttcaacnnnnnnn---ggttttccacaaccaaaatcagtactataaacctcaaattt |
101 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
4257611 |
agtcagaaagacaaaagtcaccagttctatctatagaaaccatttcaactaatttctttggttttccacaaccaaaatcagtactataatcctcaaattt |
4257710 |
T |
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| Q |
102 |
aggtgaaccagcagcaccaattgctttaacatcagcaattgcaagacctccaagtaacgatga |
164 |
Q |
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| T |
4257711 |
aggtgaaccagcagcaccaattgctttaacatcagcaattgcaagatctccaagtaacgatga |
4257773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 4289050 - 4289233
Alignment:
| Q |
1 |
ctacagtcagaaagacaaaaggcaccagttctatctattgaaaccatttcaacnnnnnnnggttttccacaaccaaaatcagtactataaacctcaaatt |
100 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
4289050 |
ctacaatcagaaagacaaaaggcaccagttctatctattgaaaccatttcaactttctttggttttccacaaccaaaatcagtgctataaacctcaaatt |
4289149 |
T |
|
| Q |
101 |
taggtgaaccagcagcaccaattgctttaacatcagcaattgcaagacctccaagtaacgatgaacacatattttcagctccat |
184 |
Q |
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|||||||||||||||||||||| ||||||||| | || ||||||||| |||||||| ||||| || |||||||||||||| |
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| T |
4289150 |
taggtgaaccagcagcaccaatcattttaacatcggtcatggcaagaccttcaagtaacaatgaagaccaattttcagctccat |
4289233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 4255356 - 4255529
Alignment:
| Q |
11 |
aaagacaaaaggcaccagttctatctattgaaaccatttcaacnnnnnnnggttttccacaaccaaaatcagtactataaacctcaaatttaggtgaacc |
110 |
Q |
| |
|
|||||||||||||||||||| ||| ||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4255356 |
aaagacaaaaggcaccagttttatttatagaaacaatttcgactttcttcggttttccacaaccaaaatcagtactataaacctcaaatttaggtgaacc |
4255455 |
T |
|
| Q |
111 |
agcagcaccaattgctttaacatcagcaattgcaagacctccaagtaacgatgaacacatattttcagctccat |
184 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||| |
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| T |
4255456 |
agcagaaccaattgttttaacatcagcaattgcaagaccttcaagtaaccatgaagaccaattttcagctccat |
4255529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 184
Target Start/End: Complemental strand, 4261121 - 4260944
Alignment:
| Q |
7 |
tcagaaagacaaaaggcaccagttctatctattgaaaccatttcaacnnnnnnnggttttccacaaccaaaatcagtactataaacctcaaatttaggtg |
106 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4261121 |
tcagaaagacaaaaagcaccagttctatctattgaaaccatttcaactttttttggttttccacatccaaaatcagtactataaacctcaaatttaggtg |
4261022 |
T |
|
| Q |
107 |
aaccagcagcaccaattgctttaacatcagcaattgcaagacctccaagtaacgatgaacacatattttcagctccat |
184 |
Q |
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|||||||||||||||| ||||||||| || || ||||||||| |||||||| ||||| || |||||||||||||| |
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| T |
4261021 |
aaccagcagcaccaatcattttaacatcggccatggcaagaccttcaagtaacaatgaagaccaattttcagctccat |
4260944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 4266652 - 4266490
Alignment:
| Q |
22 |
gcaccagttctatctattgaaaccatttcaacnnnnnnnggttttccacaaccaaaatcagtactataaacctcaaatttaggtgaaccagcagcaccaa |
121 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4266652 |
gcaccagttctatctatagaaaccatttcaactttctttggttttccacaaccaaagtcagtactataaacctcaaatttaggtgaaccagcagcaccag |
4266553 |
T |
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| Q |
122 |
ttgctttaacatcagcaattgcaagacctccaagtaacgatgaacacatattttcagctccat |
184 |
Q |
| |
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||| ||||||||||||||| | |||||| |||||||| ||||| || |||||||||||||| |
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| T |
4266552 |
ttgttttaacatcagcaatagtaagaccatcaagtaaccatgaagaccaattttcagctccat |
4266490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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