View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_low_4 (Length: 521)
Name: NF16693_low_4
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 424
Target Start/End: Complemental strand, 35351712 - 35351291
Alignment:
| Q |
14 |
agagggagggtgcgaatgtaatcattgtttacaaattcaaccaagcatatggtgcactcatgattagatt---------------taatggtattgtaga |
98 |
Q |
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| T |
35351712 |
agagggagggtgcgaatgtaatcattgttttcaaattcaaccaagcaaatggtgcactcatgattagattcatcttgtttagatttagtggtattgtaga |
35351613 |
T |
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| Q |
99 |
tgaacgagggaatagcgtttataacactcttttccaagccacaggcgtgtacgtgtggggcctccaccattgtggaatgggactccacatcgttcaacga |
198 |
Q |
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| T |
35351612 |
tgaacgagggaatagcgtttataacactcttttccaagccacaggcgtgtacgtgtggggcctccaccattgtggactgggactccacatcgttcaacga |
35351513 |
T |
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| Q |
199 |
gatgctagtgaggaaactctgatgttggaacctttggataaggcggtaacatgttactatgaccaaggcgccggccggcaaggagcataagtaatagtag |
298 |
Q |
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| T |
35351512 |
gatgctagtgaggaaactctggtgttggaacctttggataaggcggtaacatgttactatgaccaaggcgc----cggcaaggagcataagtaatagtag |
35351417 |
T |
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| Q |
299 |
tagtgatgctatcaagggtagagtaaaccctagaaccattgaaaataatggatgagctttgatggccatagttttggaatacttgaaacaatgatgagaa |
398 |
Q |
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| T |
35351416 |
tagtgatgctatcaagggtagagtaaaccctagaaccattgaaaataatggatgagctttgatggccatagttttggaatacttgaaacaatgatgagaa |
35351317 |
T |
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| Q |
399 |
tgggagttgagaagatgcaaagaaat |
424 |
Q |
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| T |
35351316 |
tgggagttgagaagatgcaaagaaat |
35351291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 384
Target Start/End: Complemental strand, 35356846 - 35356465
Alignment:
| Q |
14 |
agagggagggtgcgaatgtaatcattgtttacaaattcaaccaagcatatggtgcactcatgattagatt---------------taatggtattgtaga |
98 |
Q |
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| T |
35356846 |
agagggagagtgcgaatgtaatcattgttttcaaattcaaccaagcaaatggtgcactcatgattagattcatcttgtataggtttagtggtattgtaga |
35356747 |
T |
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| Q |
99 |
tgaacgagggaatagcgtttataacactcttttccaagccacaggcgtgtacgtgtggggcctccaccattgtggaatgggactccacatcgttcaacga |
198 |
Q |
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| T |
35356746 |
tgaacgagggaatggtgtttataacactcttttccaagccataggcgtgtacgtgtgggacctccaccattgtggactgggactccacattgttcaatga |
35356647 |
T |
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| Q |
199 |
gatgctagtgaggaaactctgatgttggaacctttggataaggcggtaacatgttactatgaccaaggcgccggccggcaaggagcataagtaatagtag |
298 |
Q |
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| T |
35356646 |
gatggaagtgaggaaactctggtgttggaacttttggataaggcggaaacatgttactatgaccaagg----tgccggcaaagagcataagtaagagtag |
35356551 |
T |
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| Q |
299 |
tagtgatgctatcaagggtagagtaaaccctagaaccattgaaaataatggatgagctttgatggccatagttttggaatacttga |
384 |
Q |
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| T |
35356550 |
tggtgatgctatccagggtagagtggactctagaaccattgaaaataatggatgagctttgatggtcatagttttgggatacttga |
35356465 |
T |
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