View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_low_5 (Length: 516)
Name: NF16693_low_5
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Complemental strand, 15420438 - 15419978
Alignment:
| Q |
19 |
ataggtacctttcttaattatggtatatagtttttgttgcaatatgtataaaggttatatgtctatggtttgcattcaaaataaaattatttgtcttgga |
118 |
Q |
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| T |
15420438 |
ataggtacctttcttaattatgctatatagtttttgttacaatattta--aaggttatatgtctatggtttgcattcaaaataaaattatttgtcttgga |
15420341 |
T |
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| Q |
119 |
taatggtagatccttgtagacatgcatcatttctgagatttcataatgatcttatttcaacattttttgttttggttaggagaaactattaataattaaa |
218 |
Q |
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| T |
15420340 |
taatggtagatccttgtagacatgcatcatttctgagatttcataatgatcttatttcaacattttttgttttggttaggagaaactattaataattaaa |
15420241 |
T |
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| Q |
219 |
atgacgttgatagtcatcttacgacggtctctgatagtcatttgtgagatttcataatgatcttaattaaacatgatgttatagtcattttactataaac |
318 |
Q |
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| T |
15420240 |
atgacgttgatagtcatcttacgacggtctctgatagtcatttgtgagatttcataatgatcttaattaaacatgatgttatagtcattttactataaac |
15420141 |
T |
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| Q |
319 |
atttgaagttttgaattgttggtatgcactacttgtaacattttagctgctacatttgttggcgaccacataagttcaaacattgattcaaagattagta |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15420140 |
atttgaagttttgaattgttggtatgcactacttgtaacattttagctgctacatttgttggcgaccacataagttcaaacattgattcaaagattaata |
15420041 |
T |
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| Q |
419 |
catggttttcataacaaaattatgtattacttataataattaacttatctttgaacacaggtt |
481 |
Q |
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| T |
15420040 |
catggttttcataacaaaattatgtattacttataataattaacttatctttgaacacaggtt |
15419978 |
T |
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