View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16693_low_6 (Length: 488)
Name: NF16693_low_6
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_low_6 |
 | |
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| [»] chr2 (13 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 22 - 488
Target Start/End: Original strand, 9030632 - 9031100
Alignment:
| Q |
22 |
ttgttgttgatttactctggacatatatcaaatatatatcaaaatgcaaggtgttgatagaagttctattttttcttctctcaatttgtaattgattaaa |
121 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9030632 |
ttgtttttgacttactctggacatatatcaaatatatatcaaaatccaaggtgtggatagaagttctattttttcttctctcaatttgtaattgattaaa |
9030731 |
T |
|
| Q |
122 |
actaatagaacaacaaagagtgtatgttcttgaacaaagagatattagtatctcacaaagcaaaggttcaacttctggtattccacaatacattatgcaa |
221 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9030732 |
actaatagaacaacatagagtgtatgttcttgcacaaagagatattagtatctcacaaagcaaaggttcaacttctggtattccacaatacattatgcaa |
9030831 |
T |
|
| Q |
222 |
attgttaacagttgtgtttttgggtgtgctcctaatgatatccatcatcactgtggttggattgttcaagagactctctcatggttcgtttggtgaatgg |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9030832 |
attgttaacagttgtgtttttgggtgtgctcctaatgatatccatcatcactgtggttggattgttcaagagactctcttatggttcgtttggtgaatgg |
9030931 |
T |
|
| Q |
322 |
agggaagcctttacttctagccaaattatt--attcacttattctaattcccttatgtaccctcttgcattcaagtcagctagattttgctgagtccaaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
9030932 |
agggaagcctttacttctagccaaattattagattcacttattctaattcccttatgtgccctcttgcattcaagtctgctagattttgctgagtccaaa |
9031031 |
T |
|
| Q |
420 |
atacaattccaaaagaataagaagaacactacatggagttcaacaaatcagtataggcccttatttatc |
488 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
9031032 |
atacaattccaaaagaataagaagaacactacatagagttcaacaaatcagtataggcccttatttatc |
9031100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 9012950 - 9013212
Alignment:
| Q |
18 |
gatgttgttgttgatttactctggacatatatcaaatatatatcaaaatgcaaggtgttgatagaagttctattttttcttctctcaatttgtaattgat |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |
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| T |
9012950 |
gatgttgttgttgatttactctgggcatatatcaaatatatatcaaaatgcaaggtgtggatagaagttctattttt-cttccctcaatttgtaattgat |
9013048 |
T |
|
| Q |
118 |
taaaactaatagaacaacaaagagtgtatgttcttgaacaaagagatattagtatctcacaaagcaaaggttcaacttctggtattccacaatacattat |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9013049 |
taaaacaaatagaacaacaaagagtgtatgttcttgcacaaagagatattagtatctcacaaaacaaaggttcaacttctggtattccacaatacattat |
9013148 |
T |
|
| Q |
218 |
gcaaattgttaacagttgtgtttttgggtgtgctcctaatgatatccatcatcactgtggttgg |
281 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
9013149 |
gcaaattgttaacacttgtgtttttggatgtgctcctaatgatatccatcttcactgtggttgg |
9013212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 9021092 - 9021350
Alignment:
| Q |
18 |
gatgttgttgttgatttactctggacatatatcaaatatatatcaaaatgcaaggtgttgatagaagttctattttttcttctctcaatttgtaattgat |
117 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
9021092 |
gatgttgttgttgatttaatctgggcatatataaaatatatatcaaaatgcatggtgttgatagaagttctattttt-cttctctcaatttgtaatt--- |
9021187 |
T |
|
| Q |
118 |
taaaactaatagaacaacaaagagtgtatgttcttgaacaaagagatattagtatctcacaaagcaaaggttcaacttctggtattccacaatacattat |
217 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | |
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|
| T |
9021188 |
-aaaacaaatagaacaacaaagagtgtatgttcttgcacaaagagatattagaatctcacaaagcaaaggttcaacttctggtattccacattacattgt |
9021286 |
T |
|
| Q |
218 |
gcaaattgttaacagttgtgtttttgggtgtgctcctaatgatatccatcatcactgtggttgg |
281 |
Q |
| |
|
||||||||||| || |||||||||||| | | ||||| |||||||||||| ||| ||||||||| |
|
|
| T |
9021287 |
gcaaattgttagcacttgtgtttttggatattctcctcatgatatccatcttcattgtggttgg |
9021350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 281 - 488
Target Start/End: Original strand, 9013241 - 9013450
Alignment:
| Q |
281 |
gattgttcaagagactctctcatggttcgtttggtgaatggagggaagcctttacttctagccaaattatta--ttcacttattctaattcccttatgta |
378 |
Q |
| |
|
||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| | |
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|
| T |
9013241 |
gattgtttaagagactctcttatggttggtttggtgaatggagggaagcctttacttctagccagattattagattcacttattctaattcccttatgaa |
9013340 |
T |
|
| Q |
379 |
ccctcttgcattcaagtcagctagattttgctgagtccaaaatacaattccaaaagaataagaagaacactacatggagttcaacaaatcagtataggcc |
478 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
9013341 |
acctcttgcattcaagtctgctagattttcctgagtccaaaatacaattccaaaagaagaagaagaatgctacatagagttcaacaaatcagtataggcc |
9013440 |
T |
|
| Q |
479 |
cttatttatc |
488 |
Q |
| |
|
|||||||||| |
|
|
| T |
9013441 |
cttatttatc |
9013450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 281 - 488
Target Start/End: Original strand, 8997118 - 8997314
Alignment:
| Q |
281 |
gattgttcaagagactctctcatggttcgtttggtgaatggagggaagcctttacttctagccaaattatt--attcacttattctaattcccttatgta |
378 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
8997118 |
gattgtttaagagactctcttatggttcgtttggtgaatggagggaagcctttacttctagccaaattattagattcacttattctaattcccttatgta |
8997217 |
T |
|
| Q |
379 |
ccctcttgcattcaagtcagctagattttgctgagtccaaaatacaattccaaaagaataagaagaacactacatggagttcaacaaatcagtataggcc |
478 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| ||||||||| |||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
8997218 |
ccctcttgcattcaaatctgctagattttgctgag-------------tccaaaagactaagaagattactacatagagttcaacaaatcagtataggcc |
8997304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 329 - 488
Target Start/End: Original strand, 9021617 - 9021778
Alignment:
| Q |
329 |
cctttacttctagccaaattatta--ttcacttattctaattcccttatgtaccctcttgcattcaagtcagctagattttgctgagtccaaaatacaat |
426 |
Q |
| |
|
||||||||| |||||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
9021617 |
cctttacttatagccagattattagattcacttattctaattccgttatgaaccctcttgcattcaagtctgctagattttcctgagtccaaaatacaat |
9021716 |
T |
|
| Q |
427 |
tccaaaagaataagaagaacactacatggagttcaacaaatcagtataggcccttatttatc |
488 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9021717 |
tccaaaagaataagaagaatactacatagagttcaacaaatcagtataggcccttatttatc |
9021778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 282 - 487
Target Start/End: Complemental strand, 13046119 - 13045909
Alignment:
| Q |
282 |
attgttcaagagactctctcatggt--tcgtttggtgaatggagggaagccttta-cttctagccaaattatta--ttcacttattctaattcccttatg |
376 |
Q |
| |
|
||||||||||||||||||| ||| | | |||||||| ||||||||||||||||| |||||| ||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
13046119 |
attgttcaagagactctcttatgatgattgtttggtgcatggagggaagcctttaacttctaaccagattattagattcacttattctaattcttttatg |
13046020 |
T |
|
| Q |
377 |
taccctcttgcattcaagtcagctagattttgctgagtccaaaatacaattccaaaagaataagaagaacactacatggagttcaacaaatcagtatagg |
476 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| | |||| |||||| | |||| | |||||| |
|
|
| T |
13046019 |
taccctcttgcattcaagtctgctagattttgctgagtccaaaatataattccaaaagaataagaagaatatgacatagagttccaaaaattattatagg |
13045920 |
T |
|
| Q |
477 |
cccttatttat |
487 |
Q |
| |
|
||||||||||| |
|
|
| T |
13045919 |
cccttatttat |
13045909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 301 - 474
Target Start/End: Original strand, 8988980 - 8989158
Alignment:
| Q |
301 |
catggttcgtttggtgaatggagggaagcctttacttctagccaaattatta--ttcacttattctaattcccttatgtaccctcttgcattcaagtc-a |
397 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8988980 |
catggttgctttggtgaatggagggaatcctttagttctagccagattattagattcacttattctaattcccttatgtaccctcttgcattcaagtctt |
8989079 |
T |
|
| Q |
398 |
gctagattttgc--tgagtccaaaatacaattccaaaagaataagaagaacactacatggagttcaacaaatcagtata |
474 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| | |||||| ||||||||||||| |
|
|
| T |
8989080 |
gctagattttgctatgagtccaaaatacaattccaaaagaataaaaagaatactacgtagagttcgacaaatcagtata |
8989158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 281 - 488
Target Start/End: Original strand, 8979840 - 8980051
Alignment:
| Q |
281 |
gattgttcaagagactctctcatggttcgtttggtgaatggagggaagcctttacttctagccaaattatt---attcacttattctaattcccttatgt |
377 |
Q |
| |
|
||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||| | |||||| | |||||||||| |||||| |
|
|
| T |
8979840 |
gattgtttaagagactctt--atggttggtttggtgaatggagggaagcctttacttctagccagattaattagattcaccttttctaattcctttatgt |
8979937 |
T |
|
| Q |
378 |
accctcttgcattcaagtcagc--tagattttgctgagtccaaaatacaattccaaaagaataagaagaacactacat-ggagttcaacaaatcagtata |
474 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||| ||| |||| ||||||| ||||||| ||||||| |||||||| || ||| |||| |
|
|
| T |
8979938 |
accctcttgcattcaagtctgctatagattttgctgagtccaaaacacagttcctaaagaatgagaagaatactacataagagttcaaaaattcattata |
8980037 |
T |
|
| Q |
475 |
ggcccttatttatc |
488 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
8980038 |
ggcctttatttatc |
8980051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 13046273 - 13046149
Alignment:
| Q |
157 |
aaagagatattagtatctcacaaagcaaaggttcaacttctggtattccacaatacattatgcaaattgttaacagttgtgtttttgggtgtgctcctaa |
256 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| |||||||| ||| ||||||||| | |
|
|
| T |
13046273 |
aaagagacattagtatctcacaaagcaaaggttcaacttctggaattccacagtacattgtgcaaattgttaacacttgtgtttctggatgtgctcctta |
13046174 |
T |
|
| Q |
257 |
tgatatccatcatcactgtggttgg |
281 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
13046173 |
tgatatccatcttcactgtggttgg |
13046149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 147 - 281
Target Start/End: Original strand, 8996946 - 8997089
Alignment:
| Q |
147 |
gttcttgaacaaagagatattagtatctcacaaagcaaaggttcaacttctggtattccacaatacat--tatgcaaattgttaacagttgtgtttttgg |
244 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| ||| |||||||| |
|
|
| T |
8996946 |
gttcttgcacgaagagatattagtatctcacaaagcaaaggttcaacttctggtattccacaatacatattgtgccaattgttaacacttgcgtttttgg |
8997045 |
T |
|
| Q |
245 |
gt-----gtgctcctaatgatat--ccatcatcactgtggttgg |
281 |
Q |
| |
|
| |||||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
8997046 |
attggatgtgctcctcatgatatatccatcttcactgtggttgg |
8997089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 337
Target Start/End: Original strand, 9021383 - 9021439
Alignment:
| Q |
281 |
gattgttcaagagactctctcatggttcgtttggtgaatggagggaagcctttactt |
337 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9021383 |
gattattcaagagactctcttatggttggtttggtgaatggagggaagcctttactt |
9021439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 8988726 - 8988758
Alignment:
| Q |
155 |
acaaagagatattagtatctcacaaagcaaagg |
187 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
|
|
| T |
8988726 |
acaaagagatattagtatctcacaaagcgaagg |
8988758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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