View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16693_low_7 (Length: 484)

Name: NF16693_low_7
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16693_low_7
NF16693_low_7
[»] chr4 (1 HSPs)
chr4 (15-484)||(32874791-32875260)


Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 15 - 484
Target Start/End: Original strand, 32874791 - 32875260
Alignment:
Q  15 aatatcacatggaactaatgacaaaaataattagcatatagacaaaaagaacaacaaaaatcttagagatatttattttttgttcctgttatattggatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32874791 aatatcacatggaactaatgacaaaaataattagcatatagacaaaaagaacaacaaaaatcttagagatatttattttttgttcctgttatattggatt 32874890  T
Q  115 tgtaaggttatggtttatgctactgcattcaccttatctcttaaagcttggttataattcaaataaagcaagagcggcaaagaaattaaacaatggctgc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32874891 tgtaaggttatggtttatgctactgcattcaccttatctcttaaagcttggttataattcaaataaagcaagagcggcaaagaaattaaacaatggctgc 32874990  T
Q  215 ttctacttcaccaaacttctcaacatctttgcacagaaatataaagaaaacatactatcattctttgctaggaaatagtatatctttgcaaaccaaactt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32874991 ttctacttcaccaaacttctcaacatctttgcacagaaatataaagaaaacatactatcattctttgctaggaaatagtatatctttgcaaaccaaactt 32875090  T
Q  315 ggtttcacatcttctgtgccgttcaataaatctgtaataagtgtgaaatgttatggaactgcaaagtatgatgaggtagtggtggatgaagaattggaca 414  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32875091 ggtttcgcatcttctgtgccgttcaataaatctgtaataagtgtgaaatgttatggaactgcaaagtatgatgaggtagtggtggatgaagaattggaca 32875190  T
Q  415 agattaggagacttcagaatggttcggatgttagaggagttgcattggaaggtgagaaaggaagaacggt 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32875191 agattaggagacttcagaatggttcggatgttagaggagttgcattggaaggcgagaaaggaagaacggt 32875260  T

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