View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_low_8 (Length: 434)
Name: NF16693_low_8
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 32258341 - 32258039
Alignment:
| Q |
17 |
gagatgaagcatagggaggctgtatgggataaacaagttaaattgtttcagcttgcagatattctgatatgaatatgaaactctct--gaattataagtt |
114 |
Q |
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| T |
32258341 |
gagatgaagcacagggaggctgtatggggtaaactagttaaattgtttcagcttgcagatattctgatatgaatatgaaactctctctgaattataagtt |
32258242 |
T |
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| Q |
115 |
cagagcaaaacataaagtacaatgctttatagaagcaatggataattctatactgcttgcttaataatctttgctatattctacctagcggactcagtat |
214 |
Q |
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| T |
32258241 |
cagagcaaaacataaagtacaatgctttatagaagcaatggataattctatactgcttgcttaataatctttgctatattctacctagcggattcagtat |
32258142 |
T |
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| Q |
215 |
gtatgtttaatctagtttactcgttagagattttataatctgaaatgtatttaacggtttttgtattataaaattggaaatatatatttttcccttttgc |
314 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32258141 |
gtatgtttaatctattttactcgttagagattttataatctgaaatgtatttaacggtttttgtattataaaattggaaatatatatttttcctttttgc |
32258042 |
T |
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| Q |
315 |
tag |
317 |
Q |
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||| |
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| T |
32258041 |
tag |
32258039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 32257994 - 32257953
Alignment:
| Q |
351 |
cctaaatcggattatataatttggagtgtggtttcccgtttc |
392 |
Q |
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| T |
32257994 |
cctaaatcggattatataatttggagtgtggtttcccgtttc |
32257953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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