View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16693_low_9 (Length: 433)
Name: NF16693_low_9
Description: NF16693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16693_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 78 - 415
Target Start/End: Original strand, 34365146 - 34365487
Alignment:
| Q |
78 |
gatgtttatgtagttttgctgtttctcgtgaggttgaagatgatatggaaaaatatatggtgtgggtagatcatcttaaaagttgtgtgtgtctttaatc |
177 |
Q |
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| T |
34365146 |
gatgtttatgtagttttgctgtttctcgtgaggttgaagatgatatgaaaaaatatatgatgtgggtagaccgtcttaaaagttgtgtgcgtctttaatc |
34365245 |
T |
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| Q |
178 |
tattggtnnnnnnnnn---ctttcttataatgagaaactctttcccctacctaccc-aaatgccaccatgttttactattcaatcttcaactccattgtg |
273 |
Q |
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| T |
34365246 |
tattggtaaaaaaaaaaaactttcctataatgaaaaactctttcccctacctaccctaaatgccaccatgttttactattcaatcttcaactccattgtg |
34365345 |
T |
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| Q |
274 |
tcgacattatgattaattttctggctgcattgcttttgaatacaattccacagccgaacaggacaaaaacatttttctatataaagaacaagatcggcaa |
373 |
Q |
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| T |
34365346 |
tcgacattatgattaattttctggctgcattgcttttgaatacaattccacagccgaacaggacaaaaacatttttctatatgaagaacaagatcggcaa |
34365445 |
T |
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| Q |
374 |
tttacatgcaccctttcttcctcgattgttcatatatcatct |
415 |
Q |
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| T |
34365446 |
tttacatgcaccctttcttcctcgattgttcgtatatcatct |
34365487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 39656707 - 39656962
Alignment:
| Q |
1 |
tgaagaagatgaacaatttgtgaaggattttttgaaattgactttattcatatgtttacgttnnnnnnngtgtttttgatg---------------ttta |
85 |
Q |
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| T |
39656707 |
tgaagaagatgaacaatttgcgaaggattttctgaaattgactttattcatatgtttacgttaaaaaaagtgtttttgatgtttatgtggtagatgttta |
39656806 |
T |
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| Q |
86 |
tgtagttttgctgtttctcgtgaggttgaagatgatatggaaaaatatatggtgtgggtagatcatcttaaaagttgtgtgtgtctttaatctattggtn |
185 |
Q |
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| T |
39656807 |
tgtagttttgctgtttctcgtgaggttgaagatgatatggaaaaatatatggtgtgggtagaccatcttaaaagttatgtgcgtctttaatctattggta |
39656906 |
T |
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| Q |
186 |
nnnnnnnnctttcttataatgagaaactctttcccctacctaccc-aaatgccacc |
240 |
Q |
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| T |
39656907 |
aaaaaaaactttcctatagtaggaaactctttcccctacccaccctaaatgccacc |
39656962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 34365080 - 34365115
Alignment:
| Q |
27 |
attttttgaaattgactttattcatatgtttacgtt |
62 |
Q |
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| T |
34365080 |
attttctgaaattgactttattcatatgtttacgtt |
34365115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 39988285 - 39988469
Alignment:
| Q |
1 |
tgaagaagatgaacaatttgtgaaggattttttgaaattgactttattcatatgtttacgttnnnnnnn-gtgtttttgatgtttatgtagttttgctgt |
99 |
Q |
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| T |
39988285 |
tgaagaagatgaacaatttgtgaaggattttctgaaattgactttattcatatgtttacgttaaaaaaaagtgtttttgatgtttatgtagttttgctgt |
39988384 |
T |
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| Q |
100 |
ttctcgtgaggttgaagatgatatggaaaaatatatggtgtgggtagatcatcttaaaagttgtgtgtgtctttaatctattggt |
184 |
Q |
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| T |
39988385 |
ttcttgtgaggttgaagatgatatgaaaaaatatacggtgtgggtagaccatcttaaaagttgtgtgcgtctttaatctattggt |
39988469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 3820651 - 3820451
Alignment:
| Q |
1 |
tgaagaagatgaacaatttgtgaaggattttttgaaattgactttattcatatgtttacgttnnnnnnn--gtgtttttgatgtttatgt---------- |
88 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3820651 |
tgaagaagatgaacaatttgcgaaggattttctgaaattgactttattcatatgtttacgttaaaaaaaaagtgtttttgatgtttatgtggtagatgtt |
3820552 |
T |
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| Q |
89 |
-----agttttgctgtttctcgtgaggttgaagatgatatggaaaaatatatggtgtgggtagatcatcttaaaagttgtgtgtgtctttaatctattgg |
183 |
Q |
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| T |
3820551 |
tatgtagttttgctgtttctcgtgaggttgaagatgatatggaaaaatatatggtgtgggtagaccatcttaaaagttatgtgcgtctttaatctattgg |
3820452 |
T |
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| Q |
184 |
t |
184 |
Q |
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| T |
3820451 |
t |
3820451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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