View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16694_low_1 (Length: 468)
Name: NF16694_low_1
Description: NF16694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16694_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 2 - 462
Target Start/End: Original strand, 5159303 - 5159757
Alignment:
| Q |
2 |
atcatattcccataccaatttgtcatctaggattctccaagaatttgagacttcatcttcttgttttgtcatatgcactcnnnnnnn-cttgaaattttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5159303 |
atcatattcccataccaatttgtcatctaggattctccaagaatttgagacttcatcttcttgttttgtcatatgcactcaaaaaaaacttgaaattttt |
5159402 |
T |
|
| Q |
101 |
taaatagtcaaacataatttgtaaannnnnnn-ggggaatagttcttacagatttatttattgaaaattatatctctaactatgtactctcnnnnnnnn- |
198 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5159403 |
taaatagtcaaacataatttgtaaattttttttggggaatagttcttacagatttatttattgaaa-ttatatctctaactatgtactctcttttttttt |
5159501 |
T |
|
| Q |
199 |
ctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaata |
298 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5159502 |
ctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattgaaggtatgaatactaccaaacacaaata |
5159601 |
T |
|
| Q |
299 |
attaattcataactgcttcacgggatggttttggggatggattgttacaatgaagataacttttttattgattttacattttaaataattaacaaaaaca |
398 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5159602 |
attaattcataactgcttcac------------gggatggattgttacaatgaagataacttttttattgattttaaattttaaataattaacaaaaaca |
5159689 |
T |
|
| Q |
399 |
atgaaataag----ttgatgtatatattgacgccattggaaaaactttaagatttttatgatgatgtc |
462 |
Q |
| |
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|
| T |
5159690 |
atgaaataagttaattaatgtatatattgacgccattggaaaaactttaagatttttatgataatgtc |
5159757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 133 - 462
Target Start/End: Original strand, 5195065 - 5195403
Alignment:
| Q |
133 |
ggggaatagttcttacagatttatttattgaaaattatatctctaactatgtactctcnnnnnnnn----ctgcagatgttcaacatttgaaaaacttga |
228 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
5195065 |
ggggaatagttcttaccgatttatttattgaaaattatatctctaactatgtactctctttttttttcttctgcagatgttcaacatttgaaaaatttga |
5195164 |
T |
|
| Q |
229 |
aaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggtt |
328 |
Q |
| |
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||||||||| ||||| | ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
5195165 |
aaatgttaagtttaaacgataatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatggtt |
5195264 |
T |
|
| Q |
329 |
ttggggatggattgttacaatgaagataacttttttattgattttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattga |
424 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| |||||||| || ||||||||||||| |
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| T |
5195265 |
ttggggatcgattgttacaatgaagataacttttttttttattttaaattttaaataattaacaaaaacaacgaaataagttaattaatgtatatattga |
5195364 |
T |
|
| Q |
425 |
cgccattggaaaaac-tttaagatttttatgatgatgtc |
462 |
Q |
| |
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||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
5195365 |
cgccattggaaaaacttttaagatttttatgataatgtc |
5195403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 172 - 462
Target Start/End: Original strand, 5181710 - 5182005
Alignment:
| Q |
172 |
tctctaactatgtactctcnnnnnnnnctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattca |
271 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | |
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|
| T |
5181710 |
tctctaactatgtactctctttttttcctgcagatgttcaacatttgaaaaacttgaaaatgttaagtttaagaaataatcaaatgaacggctcaattga |
5181809 |
T |
|
| Q |
272 |
aggtatgaatactaccaaacacaaataattaattcataactgcttcacgggatggttttggggatggattgttacaatgaagataacttttttattgatt |
371 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5181810 |
aggtatcaatactaccaaacacaaataattaattcataattgcttcacgggatggttttggggatggattgttacaatgaagataacttttatattgatt |
5181909 |
T |
|
| Q |
372 |
ttacattttaaataattaacaaaaacaatgaaataag----ttgatgtatatattgacgccattggaaaaac-tttaagatttttatgatgatgtc |
462 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
5181910 |
ttaaattttaaataattaacaaaaagaatgaaataagttaattaatgtatatattgacgccattggaaaaacttttaagatttttatgataatgtc |
5182005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 5172489 - 5172594
Alignment:
| Q |
200 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataa |
299 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||| |
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|
| T |
5172489 |
tgcagatgttcaacacttgaaaaaattgaaaatgttaagtttaagctataatcaaatgaacggctcaattgaaggtatcaatactatcaaacataaataa |
5172588 |
T |
|
| Q |
300 |
ttaatt |
305 |
Q |
| |
|
|||||| |
|
|
| T |
5172589 |
ttaatt |
5172594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 4843133 - 4843028
Alignment:
| Q |
200 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||| ||||||| |||||| |||||| |
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|
| T |
4843133 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaaggttaagcgataatcaaatgaagggctcaattgaaggtatcaatactatcaaacataaataa |
4843034 |
T |
|
| Q |
300 |
ttaatt |
305 |
Q |
| |
|
|||||| |
|
|
| T |
4843033 |
ttaatt |
4843028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 5181531 - 5181608
Alignment:
| Q |
2 |
atcatattcccataccaatttgtcatctaggattctccaagaatttgagacttcatcttcttgttttgtcatatgcac |
79 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5181531 |
atcatattcccataccaatttctcatctaggattctccaagaatttgagatttcatcttcttgttttgtcatatgcac |
5181608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 201 - 300
Target Start/End: Original strand, 5212716 - 5212815
Alignment:
| Q |
201 |
gcagatgttcaacatttgaaaaacttgaaaatgttaactttaagctataatcaaatgaacggctcaattcaaggtatgaatactaccaaacacaaataat |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| |||| || | |||||||||||||||||| || ||||||| |||| ||||||||||||||||| |
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|
| T |
5212716 |
gcagatgttcaacatttgagaaacttgaaaatgctaagtttatgcaacaatcaaatgaacggctcacttgaaggtattaatattaccaaacacaaataat |
5212815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 461
Target Start/End: Complemental strand, 4842927 - 4842849
Alignment:
| Q |
387 |
ttaacaaaaacaatgaaataagt----tgatgtatatattgacgccattggaaaaactttaagatttttatgatgatgt |
461 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
4842927 |
ttaacaaaaacaatgaaataagtaaattaatttatatattgagtccattggaaaaactttaagatttttatgataatgt |
4842849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 415 - 462
Target Start/End: Original strand, 5172630 - 5172677
Alignment:
| Q |
415 |
tatatattgacgccattggaaaaactttaagatttttatgatgatgtc |
462 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5172630 |
tatatattgagtccattggaaaaactttaagatttttatgataatgtc |
5172677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 5172339 - 5172374
Alignment:
| Q |
13 |
ataccaatttgtcatctaggattctccaagaatttg |
48 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5172339 |
ataccaatttgtcatcaaggattctccaagaatttg |
5172374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 4843183 - 4843149
Alignment:
| Q |
155 |
atttattgaaaattatatctctaactatgtactct |
189 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
4843183 |
atttattgaatattatatctctaactatgtactct |
4843149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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