View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16694_low_2 (Length: 436)
Name: NF16694_low_2
Description: NF16694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16694_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 130 - 419
Target Start/End: Complemental strand, 33126730 - 33126445
Alignment:
| Q |
130 |
gtggttggaccaaacacagcatatcttgtctcatgcgtagaagcacagtacataggagtagccaatgtagcgtctaaatcatgttgtcttcacaacctac |
229 |
Q |
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| T |
33126730 |
gtggttggaccaaacacaacatatcttgtctcatgcgtagaagcacagtacataggagtagccaatgtagcgtctaaatcatgttgtcttcacaacctac |
33126631 |
T |
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| Q |
230 |
tcttagaattatattgtcctatcacaaaagttactctggtcaattgtgacaacatcaacattgtttatctctctgacaattcagttcaacatcgacatca |
329 |
Q |
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| T |
33126630 |
tctttgaattatattgtcctatcacaaaagttactctggtcaattgtgacaacatcaacgttgtttatctctctgacaattcagttcaacatcggcatca |
33126531 |
T |
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| Q |
330 |
accatgcttcttccttccaatcatcacctttccttccttcttactcctatgacacgaccaatatttctatcttggagtgtttcagcagta |
419 |
Q |
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| T |
33126530 |
accatgcttcttccttccaatcatcacctttc----cttcttactcctatgacacggccaatatttcaatcttggagtgtctcagcagta |
33126445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 183 - 400
Target Start/End: Complemental strand, 33126223 - 33125990
Alignment:
| Q |
183 |
aggagtagccaatgtagcgtctaaatcatgttgtcttcacaac-----ctactcttagaattatattgtcctatcacaaaagttactctggtcaattgtg |
277 |
Q |
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| T |
33126223 |
aggagtagttaatgtagtgtctgaatcatgttggcttcacatcacagcctactcttggaactatattgtcctttctaaaaact-actttggtctattaag |
33126125 |
T |
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| Q |
278 |
acaacatcaacattgtttatctctctgacaattcagttcaacatcgacatcaaccatgcttcttc--------cttc----caatcatcacctttccttc |
365 |
Q |
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| T |
33126124 |
acaacatcaacgttgtttatctctcggacaatctcgttcaacatcgacaacaaccatgctttttctctcaaatcttctcttcaatcttcacttttccttc |
33126025 |
T |
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| Q |
366 |
cttcttactcctatgacacgaccaatatttctatc |
400 |
Q |
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| T |
33126024 |
cttccgactcctatgacacgatcaatatttctatc |
33125990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 37526428 - 37526362
Alignment:
| Q |
218 |
ttcacaacctactcttagaattatattgtcctatcacaaaagttactctggtcaattgtgacaacat |
284 |
Q |
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| T |
37526428 |
ttcacaacttactcttggaactatattgtcctatcacaaaagctactttggtatgttgtgacaacat |
37526362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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