View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16694_low_3 (Length: 427)
Name: NF16694_low_3
Description: NF16694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16694_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 33127306 - 33126915
Alignment:
| Q |
19 |
gaacatggttcaaagtttatgcttgtaatccaaacttacttattgatatatgtagttttggtggtttagctcttttcaggaacaaccaatggaggtgaaa |
118 |
Q |
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| T |
33127306 |
gaacatggttcaaaatttatgcttgtaatccaaacttgcttattgatatatgtagttttggtggtttagctcttttcaggaacaaccaatggaggtgaaa |
33127207 |
T |
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| Q |
119 |
gtgtttatacacaccatgctttcccctcaaaaagaaactaccaccactttaccttaattcaatattgtacacatgtcattatagctaaatataaaatcaa |
218 |
Q |
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| T |
33127206 |
gtgtttatacacaccatgctttcccctcaaaaagaaactaccaccactttaccttaattcaatattgtacacatgtcattatagctaaatataaaatcaa |
33127107 |
T |
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| Q |
219 |
tgattgaattttaaaaattgatataaaccattgagtgtaaccgtacatgtacttcacacaaaataaataaaccaattattctgattttagttaatctaag |
318 |
Q |
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| T |
33127106 |
t-----------------tgatataaaccattgagtgtaaccgtacatgtacttcacacaaaataaataaaccaattattctgattttagttaatctaag |
33127024 |
T |
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| Q |
319 |
aatgtaaagatagtaaatggatttgaagcagttgagttgcataccgatcagtacaaaatatatattatgttaagaatatatcagatttaaaagtatcatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127023 |
aatgtaaagatagtaaatggatttgaagcagttgagttgcataccgatcagtacaaaatatatattatgttaagaatatatcagatttaaaagtatcatt |
33126924 |
T |
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