View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16694_low_6 (Length: 272)
Name: NF16694_low_6
Description: NF16694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16694_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 42192768 - 42193030
Alignment:
| Q |
1 |
ccttggccaacaaggctcttgacatcacaaggtgcccagtcaagcttaaatcatgtttgacagcacaaggtgcccgaccagaatattatatgattaagtg |
100 |
Q |
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| T |
42192768 |
ccttggccaacaaggctcttgacatcacaaggtgcccagtcaagcttaaatcatgtttgacagcacaaggtgcccgaccagaatattatatgattaagtg |
42192867 |
T |
|
| Q |
101 |
agtgtttggtttgacgttcctctcatcttttctcgcgttttaggacaattctgcgtggagatagagaagctacaccttgtagattcaaggtggacacaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42192868 |
agtgtttggtttgacgttcctctcatcttttctcgcgttttaggacaattctgcgtggagatagagaagctacaccttgtagattcaaggtggacacaca |
42192967 |
T |
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| Q |
201 |
ttgactagaagttggacgtgaaaacaaataggtgttaagcttatcgaggaagctgaggccctt |
263 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42192968 |
ttgactagaagttggacgtgaaaacaaagaggtgttaagcttatcgaggaagctgaggccctt |
42193030 |
T |
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