View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16695_high_12 (Length: 301)
Name: NF16695_high_12
Description: NF16695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16695_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 5543215 - 5542946
Alignment:
| Q |
13 |
tgaacaaaatatttgcttgtttattttctctgttctttaccatagaaagtccagaaactttgtgtcgcacacaatttatattgtactttccatcgttcat |
112 |
Q |
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| T |
5543215 |
tgaacaaaatatttgcttgtttattttctctgttctttaccatagaaagtccagaaactttgtgtcgcacacaatttatattgtactttccatcgttcat |
5543116 |
T |
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| Q |
113 |
tgctttgctgtttaatttgcagtatactttatttcttgattactttatttccttcatgttaatttacacttaatcacttcaatttgtctatgttttttct |
212 |
Q |
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| T |
5543115 |
tgctttgctgtttaatttgcagtatactttatttcttgattactttatttccttcatgttaatttacacttaatcacttcaatttgtctatgttttttct |
5543016 |
T |
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| Q |
213 |
ttcggaagcttatgatccgcttgacccacatggaaatatcacaatcaaatggaatattataagttggaca |
282 |
Q |
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| T |
5543015 |
ttcggaagcttatgatccgcttgacccacatggaaatatcacaatcaaatggaatattataagttggaca |
5542946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 282
Target Start/End: Original strand, 5549242 - 5549332
Alignment:
| Q |
192 |
caatttgtctatgttttttctttcggaagcttatgatccgcttgacccacatggaaatatcacaatcaaatggaatattataagttggaca |
282 |
Q |
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| T |
5549242 |
caatttgtcggtgttctttctttcagaagcttatgatccacttgacccaaatgggaatatcacaataaaatgggatatcataagctggaca |
5549332 |
T |
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