View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16695_high_5 (Length: 532)
Name: NF16695_high_5
Description: NF16695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16695_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Complemental strand, 43588541 - 43588026
Alignment:
| Q |
1 |
caatccacacacttctaatacagggccatctctcctagagacaataattaaggtggccagtaagattgaccaaaccaatattatggtaaggaatctatct |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43588541 |
caatccacacacttctaacacagggccatctctcctagagacaataa----ggtggccagtatgattgaccaaaccaatattatggtaaggaatctatct |
43588446 |
T |
|
| Q |
101 |
tgtttaccaggtaacaaagttctagagttagatctctaccatcaccaatttcagctgtgagtaagaaaatcaatcatgcaaatgaaatcgtaaatataaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43588445 |
tgtttaccaggtaacaaagttctagagttagatctataccatcaccaatttcagctgtgagtaagaaaatcaatcatgcaaatgaaatcgtaaatataaa |
43588346 |
T |
|
| Q |
201 |
agagaattgaaagattactactatataccataaatccaaaacaaccatcctcccaaagaaacaagacacatattgcagaattaaatgttattaaaatgag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43588345 |
agagaattgaaagattactactatataccataaatccaaatcaaccatcctcccaaagaaacaagacacatattgcagaattaaatgttattaaaatgag |
43588246 |
T |
|
| Q |
301 |
ggagaggacccagtattatttattattgaagaatattttccctcccctaccttcacggcttcataaa--atagcctcagatacaaagctagctacttgtc |
398 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43588245 |
ggagagaacccagtattatttattattaaagaatattttccctcccctaccttcacggcttcataaactatagcctcagatacaaagctagctacttgtc |
43588146 |
T |
|
| Q |
399 |
aaaaggatcgatccagttctcaatgggtactgtcaccttataaatttccttaagagaccgatatttcttcatcttctttcgtctaaaaatctccttgacc |
498 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43588145 |
aaaaggatcgatccagttctcgatgggtactgtcaccttataaatttccttaagagaccgatatttcttcatcttctttcgtctaaaaatctccttgacc |
43588046 |
T |
|
| Q |
499 |
tccttattattggccctttg |
518 |
Q |
| |
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|||||||||||||||||||| |
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| T |
43588045 |
tccttattattggccctttg |
43588026 |
T |
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