View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16695_high_6 (Length: 530)
Name: NF16695_high_6
Description: NF16695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16695_high_6 |
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| [»] scaffold0042 (1 HSPs) |
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| [»] scaffold0599 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 9 - 493
Target Start/End: Complemental strand, 12635917 - 12635427
Alignment:
| Q |
9 |
gagatgaaagaatctgtgaattatgtgtcaaggtacacacaaaataagttgatttacaatttgcaaatacttgnnnnnnnn---gtgtgaacattagaaa |
105 |
Q |
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| T |
12635917 |
gagatcaaagaatcggtgaattatgtgtcaaggtacacacataataacttgatttacaatttgcaaatactttgaagaaaaaaagtgtgaacgtgagaaa |
12635818 |
T |
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| Q |
106 |
acgtacctgcattgtct-ctatatgattattcatttgataaatgtaatttaaattttttagatattggactgagaaaggtatttgctgggcaagaaattc |
204 |
Q |
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| T |
12635817 |
acatacctgcattgtcttctatatgattattcacttgataaatgtaatttaatttttttagatattggattgagaaaggtatttgctgggcaagaaattc |
12635718 |
T |
|
| Q |
205 |
tgaggttcaagatatagatgacacaacaatgggatt-agactgcttaggttacatggccaccaagtttcacccggtaagttgaaagatttcaccacatta |
303 |
Q |
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| T |
12635717 |
ataggttcaagatatagatgacataacaatgggatttagactgcttaggttgcatggccaccaagtttcacccggtaagttgaaagatttcaccatatta |
12635618 |
T |
|
| Q |
304 |
taaagtgtaaaatgagaaattaagaaaattgatatttcaatttgatcataatttattatgtatgcatgcatactatcaattaataatattttcgtcaata |
403 |
Q |
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| T |
12635617 |
taaagagtaaaatgagaaattaaggtaattgatatttcaatttgatcataatttattatgtatgcgtgcataatatcaattattaatattttcgtcaata |
12635518 |
T |
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| Q |
404 |
attgatattaattagtacttcactatgactataaagtgaattgttcaaattgga-taagtttttcataccatgtaacacaaaagttgatga |
493 |
Q |
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| T |
12635517 |
atagatattaattagtacttcactatgactataaagagaattgttcaaattggagtaagtttttcatactacataacacaaaagttgatga |
12635427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 113 - 492
Target Start/End: Original strand, 37958905 - 37959289
Alignment:
| Q |
113 |
tgcattgtct-ctatatgattattcatttgataaatgtaatttaaattttttagatattggactgagaaaggtatttgctgggcaagaaattctgaggtt |
211 |
Q |
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| T |
37958905 |
tgcattgtcttctatatgattactcacttgataaatgtaatttaaaatttatagatattggactaagaaaggtatttgctgggcgagaaattcagaggtt |
37959004 |
T |
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| Q |
212 |
caagatatagatgacacaacaatgggatt-agactgcttaggttacatggccaccaagtttcacccggtaagttgaaagatttcaccacattataaagtg |
310 |
Q |
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| T |
37959005 |
caagatatagacgacacagcaatgggatttagaatcctaaggttgcatggccaccaagtttcacctggtaagttcaaagatttcaccaccttataaagag |
37959104 |
T |
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| Q |
311 |
taaaatgagaaattaagaaaattgatatttc--aatttgatcataatttattatgtatgcatgcatactatcaattaataatattttcgtcaataattga |
408 |
Q |
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| T |
37959105 |
taaaatgagaaattaaggtaattgatatttttaaatttgatcataatttattatgtatgcccacataataccaattattaatattttcgtcaataattga |
37959204 |
T |
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| Q |
409 |
tattaattagtacttcactatgactataaagtgaattgttcaaattgga-taagtttttcataccatgtaacacaaaagttgatg |
492 |
Q |
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| T |
37959205 |
tattaattagtacttcactatgactataaagtgaattgttcaaattggagtaagtttttcatactacataacacaaaagtggatg |
37959289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 37958809 - 37958863
Alignment:
| Q |
23 |
tgtgaattatgtgtcaaggtacacacaaaataagttgatttacaatttgcaaata |
77 |
Q |
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| T |
37958809 |
tgtggattatgtgtcaaggtacataaatgataagttgatttacaatttgcaaata |
37958863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 3182068 - 3181996
Alignment:
| Q |
164 |
agatattggactgagaaaggtatttgctgggcaagaaattctgaggttcaagatatagatgacacaacaatgg |
236 |
Q |
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| T |
3182068 |
agatattggactgaaaagggcatttgttgggcaagaaattcaaatgttcaagatattgacgacacagcaatgg |
3181996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 206 - 450
Target Start/End: Complemental strand, 12890 - 12650
Alignment:
| Q |
206 |
gaggttcaagatatagatgacacaacaatgggatt-agactgcttaggttacatggccaccaagtttcacccggtaagttgaaagatttcaccacattat |
304 |
Q |
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||||||||||||||| |||| ||| |||||||||| ||| | || ||||| ||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
12890 |
gaggttcaagatataaatgatacagcaatgggatttagaatcctaaggttgcatggccaccaagtttcacccggtaagttcttagatttcaccaacttat |
12791 |
T |
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| Q |
305 |
aaagtgtaaaatgagaaattaagaaaattgatatttcaatttgatcataatttattatgtatgcatgcatactatcaattaataatattttcgtcaataa |
404 |
Q |
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| T |
12790 |
aaagagtaaaatgagaaattaag---gttgatatttcaatttgaaaataatttattatgtatgcgcgaatactatcaattattaatgttgtcatcaataa |
12694 |
T |
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| Q |
405 |
ttgatattaattagtacttcactatgactataaagtgaattgttca |
450 |
Q |
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| T |
12693 |
ttg--attaattagtacttcactaaaactataaagtgggttgttca |
12650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0599 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0599
Description:
Target: scaffold0599; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 302 - 450
Target Start/End: Original strand, 1802 - 1945
Alignment:
| Q |
302 |
tataaagtgtaaaatgagaaattaagaaaattgatatttcaatttgatcataatttattatgtatgcatgcatactatcaattaataatattttcgtcaa |
401 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | ||| ||||||||| |||| || || |||| |
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| T |
1802 |
tataaagagtaaaatgagaaattaagg---ttgatatttcaatttgaaaataatttattatgtatgcgcgaatattatcaattattaatgttgtcatcaa |
1898 |
T |
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| Q |
402 |
taattgatattaattagtacttcactatgactataaagtgaattgttca |
450 |
Q |
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| T |
1899 |
taattg--attaattagtacttcactaaaactataaagtgggttgttca |
1945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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