View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16695_low_1 (Length: 894)

Name: NF16695_low_1
Description: NF16695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16695_low_1
NF16695_low_1
[»] chr3 (24 HSPs)
chr3 (18-101)||(19659142-19659225)
chr3 (18-95)||(5348139-5348216)
chr3 (27-84)||(4657452-4657509)
chr3 (18-99)||(19631290-19631371)
chr3 (34-95)||(15044580-15044641)
chr3 (18-94)||(11832277-11832353)
chr3 (18-94)||(12252084-12252160)
chr3 (18-101)||(25660880-25660964)
chr3 (18-101)||(25667285-25667369)
chr3 (18-101)||(25673690-25673774)
chr3 (18-99)||(11829215-11829296)
chr3 (51-99)||(16218278-16218326)
chr3 (30-101)||(25680115-25680187)
chr3 (30-101)||(25688419-25688491)
chr3 (18-94)||(30104254-30104330)
chr3 (18-99)||(10935226-10935307)
chr3 (55-96)||(15540756-15540797)
chr3 (21-101)||(4161586-4161665)
chr3 (18-74)||(7770018-7770074)
chr3 (58-102)||(13440903-13440947)
chr3 (20-95)||(12695502-12695576)
chr3 (27-82)||(20421653-20421708)
chr3 (19-101)||(17394186-17394268)
chr3 (34-99)||(19431739-19431803)
[»] chr1 (9 HSPs)
chr1 (18-101)||(23475180-23475263)
chr1 (18-97)||(21721001-21721080)
chr1 (18-99)||(20408746-20408827)
chr1 (18-95)||(18621226-18621301)
chr1 (34-94)||(21424042-21424102)
chr1 (25-101)||(22615874-22615950)
chr1 (27-84)||(21981572-21981629)
chr1 (31-99)||(21403160-21403228)
chr1 (21-98)||(21682417-21682495)
[»] chr8 (13 HSPs)
chr8 (18-96)||(18829983-18830061)
chr8 (18-99)||(23539657-23539738)
chr8 (18-83)||(25281812-25281877)
chr8 (24-99)||(23543193-23543268)
chr8 (18-102)||(24625621-24625705)
chr8 (18-95)||(16090627-16090704)
chr8 (21-97)||(14392971-14393046)
chr8 (18-99)||(20496153-20496234)
chr8 (18-94)||(23241440-23241516)
chr8 (21-84)||(15887060-15887123)
chr8 (25-94)||(18829252-18829321)
chr8 (59-99)||(25264020-25264060)
chr8 (53-99)||(15929673-15929719)
[»] scaffold0228 (3 HSPs)
scaffold0228 (18-99)||(6316-6397)
scaffold0228 (18-99)||(13898-13979)
scaffold0228 (18-99)||(23850-23931)
[»] chr5 (13 HSPs)
chr5 (18-99)||(17170329-17170410)
chr5 (21-94)||(18223375-18223448)
chr5 (21-97)||(19315702-19315778)
chr5 (18-94)||(24516768-24516844)
chr5 (18-94)||(22826936-22827012)
chr5 (34-96)||(10176021-10176081)
chr5 (18-97)||(19858749-19858828)
chr5 (22-101)||(22446790-22446869)
chr5 (29-100)||(31480307-31480377)
chr5 (53-95)||(17364851-17364893)
chr5 (28-95)||(22053212-22053278)
chr5 (20-101)||(25243028-25243109)
chr5 (20-101)||(25307180-25307261)
[»] scaffold0111 (2 HSPs)
scaffold0111 (18-99)||(25296-25377)
scaffold0111 (53-101)||(29225-29273)
[»] scaffold0018 (1 HSPs)
scaffold0018 (18-95)||(61853-61930)
[»] chr6 (17 HSPs)
chr6 (18-99)||(16896798-16896879)
chr6 (18-102)||(13310656-13310739)
chr6 (18-94)||(14355784-14355860)
chr6 (27-101)||(13562477-13562551)
chr6 (18-95)||(14565892-14565969)
chr6 (18-99)||(18027827-18027908)
chr6 (18-101)||(19969028-19969109)
chr6 (18-96)||(19976592-19976670)
chr6 (18-94)||(18558147-18558223)
chr6 (27-81)||(14894554-14894608)
chr6 (20-79)||(4176997-4177055)
chr6 (45-84)||(10975683-10975722)
chr6 (18-99)||(14672253-14672334)
chr6 (18-82)||(15514654-15514716)
chr6 (19-91)||(5484119-5484191)
chr6 (34-93)||(9296635-9296693)
chr6 (63-101)||(23301340-23301378)
[»] scaffold0039 (1 HSPs)
scaffold0039 (18-101)||(8622-8705)
[»] chr7 (12 HSPs)
chr7 (18-101)||(11773285-11773368)
chr7 (18-99)||(13761022-13761103)
chr7 (34-102)||(18083286-18083354)
chr7 (18-98)||(3169557-3169637)
chr7 (18-99)||(16095583-16095664)
chr7 (51-99)||(16197719-16197767)
chr7 (18-98)||(29740550-29740629)
chr7 (18-102)||(17923286-17923370)
chr7 (55-99)||(8326472-8326516)
chr7 (18-102)||(19070667-19070750)
chr7 (18-99)||(5550-5630)
chr7 (53-98)||(13146672-13146717)
[»] scaffold0964 (1 HSPs)
scaffold0964 (18-102)||(2924-3008)
[»] chr2 (10 HSPs)
chr2 (27-95)||(20511080-20511148)
chr2 (19-99)||(18995999-18996079)
chr2 (27-99)||(24282382-24282453)
chr2 (18-99)||(28774992-28775072)
chr2 (18-84)||(19285332-19285397)
chr2 (21-95)||(24699272-24699346)
chr2 (18-67)||(19901698-19901747)
chr2 (21-101)||(24689915-24689995)
chr2 (18-101)||(21654964-21655047)
chr2 (51-101)||(21909410-21909460)
[»] scaffold0050 (1 HSPs)
scaffold0050 (18-97)||(77997-78076)
[»] scaffold0007 (1 HSPs)
scaffold0007 (34-101)||(204092-204159)
[»] chr4 (11 HSPs)
chr4 (18-99)||(16571919-16572000)
chr4 (18-97)||(21982714-21982793)
chr4 (18-94)||(28801555-28801630)
chr4 (18-96)||(9273388-9273466)
chr4 (53-95)||(11777004-11777046)
chr4 (45-102)||(16684900-16684957)
chr4 (18-99)||(15712175-15712258)
chr4 (21-96)||(9253420-9253495)
chr4 (27-94)||(9567330-9567397)
chr4 (18-95)||(9652752-9652827)
chr4 (36-101)||(23269250-23269315)
[»] scaffold0014 (1 HSPs)
scaffold0014 (18-97)||(202204-202282)
[»] scaffold0196 (1 HSPs)
scaffold0196 (18-98)||(17701-17780)
[»] scaffold0193 (1 HSPs)
scaffold0193 (18-94)||(19661-19737)
[»] scaffold0186 (1 HSPs)
scaffold0186 (18-93)||(19822-19897)
[»] scaffold0004 (1 HSPs)
scaffold0004 (18-101)||(370687-370770)
[»] scaffold0112 (1 HSPs)
scaffold0112 (18-82)||(13967-14031)
[»] scaffold0040 (1 HSPs)
scaffold0040 (45-101)||(42367-42423)
[»] scaffold0205 (1 HSPs)
scaffold0205 (32-94)||(8755-8817)
[»] scaffold0772 (1 HSPs)
scaffold0772 (18-95)||(2111-2187)
[»] scaffold0001 (2 HSPs)
scaffold0001 (51-99)||(151223-151271)
scaffold0001 (53-95)||(155616-155658)
[»] scaffold0020 (1 HSPs)
scaffold0020 (51-93)||(109106-109148)
[»] scaffold0305 (1 HSPs)
scaffold0305 (18-63)||(10303-10348)
[»] scaffold0183 (1 HSPs)
scaffold0183 (18-79)||(11826-11886)
[»] scaffold0058 (1 HSPs)
scaffold0058 (18-98)||(73550-73628)
[»] scaffold0013 (1 HSPs)
scaffold0013 (18-102)||(6439-6523)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 2e-27; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 19659225 - 19659142
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    |||||||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19659225 tacacacatagacaattaatcacacaaaagcacatataaacacacataataaataattaaaataattctagcgaaaaacgggct 19659142  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 5348139 - 5348216
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaa 95  Q
    |||||||| ||||||||||||| ||| ||| | |||||||||||||||||||||||||||||||||| ||||||||||    
T  5348139 tacacacatagacaattaatcatatacaagtacatataaacacacataataaataattaaaataattctagcgaaaaa 5348216  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 4657452 - 4657509
Alignment:
Q  27 agacaattaatcacatagaagcatatataaacacacataataaataattaaaataatt 84  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  4657452 agacaattaatcacatacaagcacatataaacacacataataaataattaaaataatt 4657509  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 19631371 - 19631290
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||| ||||||||||||||| | ||||| ||||||||||||||||||||||| ||||| |||| |||| |||||||||    
T  19631371 tacacacagagacaattaatcacacacaagcacatataaacacacataataaataaataaaacaattctagcaaaaaacggg 19631290  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 15044641 - 15044580
Alignment:
Q  34 taatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaa 95  Q
    ||||||||||  |||| ||||||||||| ||||||||||||||||||||||||||| |||||    
T  15044641 taatcacatacgagcacatataaacacatataataaataattaaaataattatagcaaaaaa 15044580  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 11832353 - 11832277
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaa 94  Q
    |||||| | |||||| |||||||||| ||||| ||||||||| |||||| || |||||||||||||| |||||||||    
T  11832353 tacacatagagacaaataatcacatacaagcacatataaacatacataaaaattaattaaaataattctagcgaaaa 11832277  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 12252160 - 12252084
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaa 94  Q
    |||||| | |||||| ||||| |||| ||||| |||| |||||||||||||| |||||||||||||| |||||||||    
T  12252160 tacacatagagacaaataatcgcatacaagcacatatgaacacacataataattaattaaaataattctagcgaaaa 12252084  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 25660964 - 25660880
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaa-taattatagcgaaaaacgggct 101  Q
    |||||||| || ||||||| |||||| ||||| ||||||||| ||||||||| ||| ||||| ||||| ||||||||||||||||    
T  25660964 tacacacagaggcaattaagcacatacaagcacatataaacatacataataattaaataaaaataattctagcgaaaaacgggct 25660880  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 25667369 - 25667285
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaa-taattatagcgaaaaacgggct 101  Q
    |||||||| || ||||||| |||||| ||||| ||||||||| ||||||||| ||| ||||| ||||| ||||||||||||||||    
T  25667369 tacacacagaggcaattaagcacatacaagcacatataaacatacataataattaaataaaaataattctagcgaaaaacgggct 25667285  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 25673774 - 25673690
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaa-taattatagcgaaaaacgggct 101  Q
    |||||||| || ||||||| |||||| ||||| ||||||||| ||||||||| ||| ||||| ||||| ||||||||||||||||    
T  25673774 tacacacagaggcaattaagcacatacaagcacatataaacatacataataattaaataaaaataattctagcgaaaaacgggct 25673690  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 11829215 - 11829296
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||| ||| || |||||||||| ||| ||||||||||||||||||||| |||| ||| ||| | ||||||||| ||||    
T  11829215 tacacacagagataaataatcacatacaagaatatataaacacacataataattaataaaagtaaatctagcgaaaatcggg 11829296  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 16218326 - 16218278
Alignment:
Q  51 atataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||| |||||||||||||||||||||||||| || ||||||||||||||    
T  16218326 atatcaacacacataataaataattaaaatatttctagcgaaaaacggg 16218278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 25680187 - 25680115
Alignment:
Q  30 caattaatcacatagaagcatatataaacacacataataaataattaaaa-taattatagcgaaaaacgggct 101  Q
    ||||||| |||||| ||||| ||||||||| ||||||||| ||| ||||| ||||| ||||||||||||||||    
T  25680187 caattaagcacatacaagcacatataaacatacataataattaaataaaaataattctagcgaaaaacgggct 25680115  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 25688491 - 25688419
Alignment:
Q  30 caattaatcacatagaagcatatataaacacacataataaataattaaaa-taattatagcgaaaaacgggct 101  Q
    ||||||| |||||| ||||| ||||||||| ||||||||| ||| ||||| ||||| ||||||||||||||||    
T  25688491 caattaagcacatacaagcacatataaacatacataataattaaataaaaataattctagcgaaaaacgggct 25688419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 30104330 - 30104254
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaa 94  Q
    |||||||||| |||  |||||||||| || || ||||||||||||||||| | |||||||||||||| |||| ||||    
T  30104330 tacacacaaaaacagataatcacatacaaacacatataaacacacataatcattaattaaaataattctagcaaaaa 30104254  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 10935226 - 10935307
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    ||||||||||| ||| |||||||| | || || |||| ||||||| |||||| |||||||||||| | |||| |||||||||    
T  10935226 tacacacaaaggcaaataatcacacataaacacatattaacacacttaataattaattaaaataaatctagcaaaaaacggg 10935307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 15540756 - 15540797
Alignment:
Q  55 aaacacacataataaataattaaaataattatagcgaaaaac 96  Q
    |||||||||||||||||||||||||||||| ||| |||||||    
T  15540756 aaacacacataataaataattaaaataattttagtgaaaaac 15540797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 4161665 - 4161586
Alignment:
Q  21 acacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    ||||| || |||||||||||||| ||||||||| ||||||| || | ||| ||||||||||| | ||||||||| ||||||    
T  4161665 acacagaggcaattaatcacataaaagcatataaaaacacatatta-aaacaattaaaataaatctagcgaaaatcgggct 4161586  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 7770074 - 7770018
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataat 74  Q
    ||||| || ||||||| ||||||||| ||||| ||| ||||||||||||||||||||    
T  7770074 tacacgcagagacaataaatcacatacaagcacatacaaacacacataataaataat 7770018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 13440903 - 13440947
Alignment:
Q  58 cacacataataaataattaaaataattatagcgaaaaacgggcta 102  Q
    |||| |||||||||||||||||| ||| |||||||||||||||||    
T  13440903 cacatataataaataattaaaatgattctagcgaaaaacgggcta 13440947  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 12695576 - 12695502
Alignment:
Q  20 cacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaa 95  Q
    |||||| ||||||| ||||||||  ||||| |||| |||||| |||| | ||||||||||||||| ||||||||||    
T  12695576 cacacagagacaat-aatcacatgcaagcacatatcaacacatataagagataattaaaataattctagcgaaaaa 12695502  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 20421653 - 20421708
Alignment:
Q  27 agacaattaatcacatagaagcatatataaacacacataataaataattaaaataa 82  Q
    |||||||||||||| || ||||| ||||||||||| |||| || ||||||||||||    
T  20421653 agacaattaatcacgtacaagcacatataaacacatataaaaattaattaaaataa 20421708  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 17394186 - 17394268
Alignment:
Q  19 acacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    ||||||| || ||| |||||||| | ||||||||||||||||  |||||||| ||| ||||||| | || |||||| ||||||    
T  17394186 acacacataggcaaataatcacacacaagcatatataaacacttataataaaaaataaaaataaatttaacgaaaatcgggct 17394268  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 19431739 - 19431803
Alignment:
Q  34 taatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||||| ||||| ||||||||||| | || || |||||||||||| | ||||||||||||||    
T  19431739 taatcacatacaagcacatataaacacataaaa-aattaattaaaataaatctagcgaaaaacggg 19431803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 23475263 - 23475180
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    |||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| |||||||||| |||||    
T  23475263 tacacacagagacaattaatcacatacaagcacatataatcacacataataaataattaaaataattctagcgaaaaatgggct 23475180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 21721001 - 21721080
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacg 97  Q
    |||||||| |||||||||||||||||  |||| |||||||||||||||||||||||||||| | ||| ||||||||||||    
T  21721001 tacacacagagacaattaatcacatacgagcacatataaacacacataataaataattaaagtgattctagcgaaaaacg 21721080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 20408746 - 20408827
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||| |||||| |||||||| | ||  | ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20408746 tacacacatagacaaataatcacacacaaaaacatataaacacacataataagtaattaaaataattatagcgaaaaacggg 20408827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 18621301 - 18621226
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaa 95  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||  ||| |||| ||||||||||    
T  18621301 tacacacagagacaattaatcacatacaagcacatataaacacacataataaataat--aaaaaattctagcgaaaaa 18621226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 21424042 - 21424102
Alignment:
Q  34 taatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaa 94  Q
    |||||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||||    
T  21424042 taatcacatacaagcacatataaacacacataataattaattaaaataattctagcgaaaa 21424102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 22615874 - 22615950
Alignment:
Q  25 aaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    ||||| || |||||||||| ||||  ||||||||||||||||||||||||||||| |  ||||||||||||||||||    
T  22615874 aaagataaataatcacatacaagcgcatataaacacacataataaataattaaaacatctatagcgaaaaacgggct 22615950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 21981572 - 21981629
Alignment:
Q  27 agacaattaatcacatagaagcatatataaacacacataataaataattaaaataatt 84  Q
    |||||| |||||||||| ||||| |||| |||||||||||||| ||||||||||||||    
T  21981572 agacaaataatcacatacaagcacatatgaacacacataataattaattaaaataatt 21981629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 21403160 - 21403228
Alignment:
Q  31 aattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    ||||||||||||| ||| |   |||||||||||||||||||||||||||||||| |||  |||||||||    
T  21403160 aattaatcacatacaagaaccaataaacacacataataaataattaaaataattctagtaaaaaacggg 21403228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 21682417 - 21682495
Alignment:
Q  21 acacaaagacaattaatcacatagaagcatatataaacacacataataaataatt-aaaataattatagcgaaaaacgg 98  Q
    ||||||||||||||||||||  | || || |||||||| |||||||  ||||||| ||||||||| |||||||||||||    
T  21682417 acacaaagacaattaatcacgcataaacacatataaacgcacataagcaataattcaaaataattctagcgaaaaacgg 21682495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 2e-24; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 18830061 - 18829983
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaac 96  Q
    |||||||| ||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  18830061 tacacacagagacaattaattacatacaagcacatataaatacacataataaataattaaaataattatagcgaaaaac 18829983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 23539738 - 23539657
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||| ||| || |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23539738 tacacacatagataaataatcacatacaagcgcatataaacacacataataaataattaaaataattatagcgaaaaacggg 23539657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 25281812 - 25281877
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataat 83  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  25281812 tacacacaaagacaattaatcacatacaagcacatataaacacacataataaataattaaaataat 25281877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 23543193 - 23543268
Alignment:
Q  24 caaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| |||| |||||||||    
T  23543193 caaagacaattaatcatatataagcacatataaacacacataataaataattaaaataattctagcaaaaaacggg 23543268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 24625621 - 24625705
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggcta 102  Q
    |||||||| |||||| |||||||||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||| |||||||    
T  24625621 tacacacagagacaaataatcacatacaagcacatataaacacatataataaataaataaaataattctagcgaaaatcgggcta 24625705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 16090704 - 16090627
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaa 95  Q
    ||||||||||||||||||||||||   ||||  ||||| |||||||||||||||||||||||||||| ||||||||||    
T  16090704 tacacacaaagacaattaatcacacgcaagcgcatatagacacacataataaataattaaaataattctagcgaaaaa 16090627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 14393046 - 14392971
Alignment:
Q  21 acacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacg 97  Q
    ||||| ||||||||||||||||  ||||||| ||||||||| |||||||||||||||||||| | ||||||||||||    
T  14393046 acacacagacaattaatcacatgcaagcata-ataaacacatataataaataattaaaataaatctagcgaaaaacg 14392971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 20496234 - 20496153
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||| ||| ||||||||||||| | | ||||| | ||||||||||||||||| |||||||||||||| ||||||||| ||||    
T  20496234 tacatacagagacaattaatcatacacaagcacaaataaacacacataataattaattaaaataattctagcgaaaatcggg 20496153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 23241516 - 23241440
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaa 94  Q
    |||| ||||||||||||||||||| | ||||| || |||| ||||||||||||||| |||||||||| |||| ||||    
T  23241516 tacaaacaaagacaattaatcacacacaagcacatgtaaatacacataataaataaataaaataattttagccaaaa 23241440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 15887060 - 15887123
Alignment:
Q  21 acacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataatt 84  Q
    ||||| ||||||||||||||||| |||   |||||||||| |||||||||||||||||||||||    
T  15887060 acacagagacaattaatcacatacaagtgcatataaacacgcataataaataattaaaataatt 15887123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 18829252 - 18829321
Alignment:
Q  25 aaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaa 94  Q
    ||||| || ||| |||||||||||| |||||||| |||| | |||||||||||||||||| ||| |||||    
T  18829252 aaagataaataaccacatagaagcacatataaacgcacacactaaataattaaaataattctagagaaaa 18829321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 25264020 - 25264060
Alignment:
Q  59 acacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||||||||||||||||||||| || |||||||||||    
T  25264020 acacataataaataattaaaataattctatcgaaaaacggg 25264060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 15929673 - 15929719
Alignment:
Q  53 ataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    ||||||| | ||||||||||| |||||||||| ||||||||||||||    
T  15929673 ataaacaaatataataaataaataaaataattttagcgaaaaacggg 15929719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 58; Significance: 6e-24; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 6397 - 6316
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||| |||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  6397 tacacacagagacaaataatcacatacaagcacatataaacacacataataaataattaaaataattctagcgaaaatcggg 6316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 13979 - 13898
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||| |||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  13979 tacacacagagacaaataatcacatacaagcacatataaacacacataataaataattaaaataattctagcgaaaatcggg 13898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 23931 - 23850
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||| |||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  23931 tacacacagagacaaataatcacatacaagcacatataaacacacataataaataattaaaataattctagcgaaaatcggg 23850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 6e-24; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 17170329 - 17170410
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||| ||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  17170329 tacacacagagacaattaatcacatacaagcgcatataaacacacataataaataattaaaataattgtagagaaaaacggg 17170410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 18223448 - 18223375
Alignment:
Q  21 acacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaa 94  Q
    ||||||| | |||||||| |||| ||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  18223448 acacaaatataattaatcgcatacaagcacatataaacacacataataaataattaaaataattctagcgaaaa 18223375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 19315778 - 19315702
Alignment:
Q  21 acacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacg 97  Q
    ||||| |||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||  ||||||||    
T  19315778 acacagagacaaataatcacatacaagcacatataaacacacataatgaataattaaaataattatattgaaaaacg 19315702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 24516768 - 24516844
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaa 94  Q
    |||||||| ||||||||||||||||| ||||| |||||||| |||||||||| |||||||||||||| |||| ||||    
T  24516768 tacacacagagacaattaatcacatacaagcacatataaacgcacataataattaattaaaataattttagcaaaaa 24516844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 22827012 - 22826936
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaa 94  Q
    |||||||| |||| | |||||||||| ||| | ||||| ||||||||||||| |||||||||||||| |||| ||||    
T  22827012 tacacacagagacgaataatcacatacaagaacatatagacacacataataattaattaaaataattctagcaaaaa 22826936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 10176081 - 10176021
Alignment:
Q  34 taatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaac 96  Q
    |||||||||| || || |||||||||||  ||||||||||||||||||||| |||||||||||    
T  10176081 taatcacatacaaacacatataaacaca--taataaataattaaaataattctagcgaaaaac 10176021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 19858828 - 19858749
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacg 97  Q
    |||||||| |||||| |||||||| | |||   |||||| ||||||||||||||||||| ||||||| || |||||||||    
T  19858828 tacacacagagacaaataatcacacacaagagcatataaccacacataataaataattagaataattctaacgaaaaacg 19858749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 22446790 - 22446869
Alignment:
Q  22 cacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    |||| ||||||  ||||||||| |  || ||||||||||||||||||| ||| |||||||||| ||||||||| ||||||    
T  22446790 cacatagacaaacaatcacatacacacacatataaacacacataataattaaataaaataattctagcgaaaatcgggct 22446869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 31480307 - 31480377
Alignment:
Q  29 acaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggc 100  Q
    |||| |||||| ||| ||||| |||||||||||||||||  ||||||||||||||| ||||||||| |||||    
T  31480307 acaaataatcatatacaagcacatataaacacacataat-gataattaaaataattctagcgaaaatcgggc 31480377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 17364851 - 17364893
Alignment:
Q  53 ataaacacacataataaataattaaaataattatagcgaaaaa 95  Q
    ||||||||| |||||||||||||||||||||| |||| |||||    
T  17364851 ataaacacatataataaataattaaaataattctagctaaaaa 17364893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 22053278 - 22053212
Alignment:
Q  28 gacaattaatcacatagaagcatatataaacacacataataaa-taattaaaataattatagcgaaaaa 95  Q
    ||||||||||||||||| |||| ||||||  |||| |||||||  ||||||||||| ||||||||||||    
T  22053278 gacaattaatcacataggagcacatataa--acacgtaataaagcaattaaaataaatatagcgaaaaa 22053212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 25243109 - 25243028
Alignment:
Q  20 cacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    |||||||||| || ||| |||||  || || | ||||||||| |||||||||| ||||||||||| |||| |||||| ||||    
T  25243109 cacacaaagaaaaataagcacatgtaaacacacataaacacatataataaatagttaaaataattctagctaaaaacaggct 25243028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 25307261 - 25307180
Alignment:
Q  20 cacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    |||||||||| || ||| |||||  || || | ||||||||| |||||||||| ||||||||||| |||| |||||| ||||    
T  25307261 cacacaaagaaaaataagcacatgtaaacacacataaacacatataataaatagttaaaataattctagctaaaaacaggct 25307180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 25296 - 25377
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||| ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| ||| ||||| ||||    
T  25296 tacacacacagacaattaatcacatacaagcacatataaaaacacataataaataattaaaataattctagtgaaaatcggg 25377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 29273 - 29225
Alignment:
Q  53 ataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    ||||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  29273 ataaacacatataataaataattaaaataattatagcaaaaaacaggct 29225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 61853 - 61930
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaa 95  Q
    |||||||| ||||||||||||||||| || || ||||| |||||||||||||||||||||||||||| ||||||||||    
T  61853 tacacacagagacaattaatcacatataaacaaatatagacacacataataaataattaaaataattctagcgaaaaa 61930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 2e-21; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 16896798 - 16896879
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| || | |||||||||    
T  16896798 tacacacagagacaattcatcacatacaagcacatataaacacacataataaataattaaaataattctaacaaaaaacggg 16896879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 13310656 - 13310739
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggcta 102  Q
    |||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||| |||||||| | ||||||||| |||||||    
T  13310656 tacacacaaagacaattaattacatagaagcacacataaatacacataataaataa-taaaataaatctagcgaaaatcgggcta 13310739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 14355784 - 14355860
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaa 94  Q
    |||||||| || |||| ||||||| | ||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  14355784 tacacacagaggcaatcaatcacacacaagcacatataaacacacataataaataattaaaataattttagcgaaaa 14355860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 13562551 - 13562477
Alignment:
Q  27 agacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    ||||||||||||||| | ||||  ||||||||||| |||||||||| ||||||||||| ||||||||||||||||    
T  13562551 agacaattaatcacacacaagcgaatataaacacatataataaatatttaaaataattttagcgaaaaacgggct 13562477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 14565969 - 14565892
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaa 95  Q
    |||||||||||||||||||||||| | ||  | |||||||||||||||||||||||||||||||| | || |||||||    
T  14565969 tacacacaaagacaattaatcacacataaaaacatataaacacacataataaataattaaaataaatctaacgaaaaa 14565892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 18027908 - 18027827
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||| ||| || |||||||| | ||||| |||||||||||||||||||||||||||||||||| || | |||||||||    
T  18027908 tacacacagagataaataatcacacacaagcacatataaacacacataataaataattaaaataattctatcaaaaaacggg 18027827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 19969109 - 19969028
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    |||| |||||| ||||||||||| || ||||| ||| ||||||||||  |||||||||||||||||||||||||||||| ||||    
T  19969109 tacatacaaaggcaattaatcacttacaagcacataaaaacacacat--taaataattaaaataattatagcgaaaaacaggct 19969028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 19976670 - 19976592
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaac 96  Q
    ||||||||||| ||| |||||||| | ||||| ||||||||||| ||||||||||| |||||||||| ||| |||||||    
T  19976670 tacacacaaaggcaaataatcacacaaaagcacatataaacacatataataaataactaaaataattctagagaaaaac 19976592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 18558147 - 18558223
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaa 94  Q
    |||||||| |||||| ||| |||||| ||||| ||||||||| ||||||||| |||||||||||||| || ||||||    
T  18558147 tacacacatagacaaataaacacatacaagcacatataaacatacataataattaattaaaataattctaacgaaaa 18558223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 14894554 - 14894608
Alignment:
Q  27 agacaattaatcacatagaagcatatataaacacacataataaataattaaaata 81  Q
    |||||| |||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  14894554 agacaaataatcatatacaagcacatataaacacacataataaataattaaaata 14894608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 4177055 - 4176997
Alignment:
Q  20 cacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaa 79  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||| ||| ||||||||    
T  4177055 cacacaaagacaaataatcacatatgagcatatataaacacacataa-aaacaattaaaa 4176997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 10975683 - 10975722
Alignment:
Q  45 aagcatatataaacacacataataaataattaaaataatt 84  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  10975683 aagcatatataaacacacataataattaattaaaataatt 10975722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 14672253 - 14672334
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||| || |||||||||||||| ||||| ||||||| ||| |||| || |||||||||||| | || |||||| ||||    
T  14672253 tacacacagaggcaattaatcacatacaagcacatataaatacatataaaaattaattaaaataaatctaacgaaaatcggg 14672334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 15514716 - 15514654
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataa 82  Q
    |||||||| || |||||||||||||| |||||||||||||  ||||||| || ||||||||||||    
T  15514716 tacacacagaggcaattaatcacatacaagcatatataaa--cacataaaaattaattaaaataa 15514654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 5484191 - 5484119
Alignment:
Q  19 acacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcga 91  Q
    ||||||| |||||| |||||||||| || || | |||||||  ||||||||||||||| ||||||| ||||||    
T  5484191 acacacagagacaactaatcacatacaaacacacataaacatgcataataaataattagaataattctagcga 5484119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 9296635 - 9296693
Alignment:
Q  34 taatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaa 93  Q
    |||||||||| ||||| ||||||| ||||||||||||||| |||||||| | ||||||||    
T  9296635 taatcacatacaagcacatataaatacacataataaataa-taaaataaatctagcgaaa 9296693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 23301340 - 23301378
Alignment:
Q  63 ataataaataattaaaataattatagcgaaaaacgggct 101  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  23301340 ataataaataaataaaataattctagcgaaaaacgggct 23301378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 8622 - 8705
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    |||||||| |||| | |||||||||| ||||| |||||||||||||||||||||||||||||||||| |||| |||||| ||||    
T  8622 tacacacagagacgagtaatcacatacaagcacatataaacacacataataaataattaaaataattctagcaaaaaacaggct 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 11773368 - 11773285
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    |||||||| |||||| || ||||| | ||||| |||||||||||||||||||||||||||||||||| || |||||||||||||    
T  11773368 tacacacagagacaaatagtcacacacaagcacatataaacacacataataaataattaaaataattttaacgaaaaacgggct 11773285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 13761103 - 13761022
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||| |||||| |||||||||| ||| | ||||||| ||||||||||||||||||||||||||  |||||||||||||    
T  13761103 tacacacatagacaaataatcacatacaagtacatataaatacacataataaataattaaaataattccagcgaaaaacggg 13761022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 18083286 - 18083354
Alignment:
Q  34 taatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggcta 102  Q
    |||||||||| ||||| ||||||||||| |||||||||||||||||||||| | | |||||||||||||    
T  18083286 taatcacatacaagcacatataaacacatataataaataattaaaataattctcgggaaaaacgggcta 18083354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 3169637 - 3169557
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgg 98  Q
    |||||||||||| || | |||||||  ||  | |||||||||||||||||||||| ||||||||||| |||||||||||||    
T  3169637 tacacacaaagataaatgatcacatgcaacaacatataaacacacataataaatatttaaaataattctagcgaaaaacgg 3169557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 16095583 - 16095664
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    ||||||||||||||| |||  ||| | || || ||||||||||||||||  |||||||||||||||| |||| |||||||||    
T  16095583 tacacacaaagacaactaagtacaaacaaacacatataaacacacataaataataattaaaataattctagctaaaaacggg 16095664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 16197719 - 16197767
Alignment:
Q  51 atataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    ||||||||||| |||||||||||||||||||||| || |||||||||||    
T  16197719 atataaacacatataataaataattaaaataattctaacgaaaaacggg 16197767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 29740629 - 29740550
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgg 98  Q
    |||||||| |||||| |||||||||| || || |||||| ||||||||||| | ||||||||||||| || ||||||||||    
T  29740629 tacacacatagacaaataatcacataaaa-cacatataagcacacataatagacaattaaaataattctaacgaaaaacgg 29740550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 17923286 - 17923370
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaa-taattatagcgaaaaacgggcta 102  Q
    |||||||| |||||||||||||||||  |||||| |||||||||||| | ||| |||||||| ||| | ||||||||| |||||||    
T  17923286 tacacacatagacaattaatcacatacgagcataaataaacacacatta-aaacaattaaaattaaatctagcgaaaatcgggcta 17923370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 8326516 - 8326472
Alignment:
Q  55 aaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||| ||||||||||||| ||||||||| ||||||||||||||    
T  8326516 aaacactcataataaataatgaaaataattctagcgaaaaacggg 8326472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 19070667 - 19070750
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggcta 102  Q
    |||||||| ||||||  |||||||||  |||||| |||||||||||||| ||| ||||||||||| | || |||||| |||||||    
T  19070667 tacacacatagacaaacaatcacatacgagcataaataaacacacataa-aaacaattaaaataaatctaacgaaaatcgggcta 19070750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 5550 - 5630
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||| || ||| |||||||||  |||| || ||||||||||||||||||||| |||||||| | ||||| ||| ||||    
T  5550 tacacacagaggcaaataatcacatgcaagcttaaataaacacacataataaataa-taaaataaatctagcgtaaatcggg 5630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 13146672 - 13146717
Alignment:
Q  53 ataaacacacataataaataattaaaataattatagcgaaaaacgg 98  Q
    ||||||||| |||||||||||||||||||||| || | ||||||||    
T  13146672 ataaacacatataataaataattaaaataattctatcaaaaaacgg 13146717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0964 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0964
Description:

Target: scaffold0964; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 2924 - 3008
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggcta 102  Q
    ||||||||||||||| |||||| ||| ||||| ||||||||| ||| |||||||||||||| ||||| ||| |||||||||||||    
T  2924 tacacacaaagacaaataatcagatacaagcacatataaacatacaaaataaataattaaattaattctagtgaaaaacgggcta 3008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 20511080 - 20511148
Alignment:
Q  27 agacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaa 95  Q
    ||||||||||||||||| || || ||||||||| |||||||||||||||||||||||| ||||||||||    
T  20511080 agacaattaatcacatacaaacacatataaacatacataataaataattaaaataattctagcgaaaaa 20511148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 18995999 - 18996079
Alignment:
Q  19 acacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    ||||||| |||||| |||||| ||| ||||| | ||||||||||||||||| |||||||||||| ||| ||||||| ||||    
T  18995999 acacacagagacaaataatcatatacaagcacaaataaacacacataataattaattaaaataactattgcgaaaatcggg 18996079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 24282382 - 24282453
Alignment:
Q  27 agacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    ||||||||||||| ||| ||||| |||||| |||| |||||||||||||||||||||| ||| ||||||||||    
T  24282382 agacaattaatcatatacaagcacatataa-cacaaataataaataattaaaataattttagtgaaaaacggg 24282453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 28774992 - 28775072
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||||||| |||||| |||||| ||| || || |||||| ||||| ||||||||||||||||| ||| ||||||||||||||    
T  28774992 tacacacacagacaaataatcatatacaaacacatataatcacacgtaataaataattaaaat-attctagcgaaaaacggg 28775072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 19285332 - 19285397
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataatt 84  Q
    |||||||| ||||||||||||||| | || |  |||||| |||||||||||||||||||||||||||    
T  19285332 tacacacagagacaattaatcacacacaaacgcatataa-cacacataataaataattaaaataatt 19285397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 24699346 - 24699272
Alignment:
Q  21 acacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaa 95  Q
    |||||||| ||||||| |||| | ||  | ||||||||||| |||||||||||||||||||||| || |||||||    
T  24699346 acacaaaggcaattaagcacacataaatacatataaacacatataataaataattaaaataattctatcgaaaaa 24699272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 19901747 - 19901698
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataat 67  Q
    |||||||||||| ||||||||||||| ||| | |||||||||||||||||    
T  19901747 tacacacaaagaaaattaatcacatacaagaacatataaacacacataat 19901698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 24689995 - 24689915
Alignment:
Q  21 acacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    |||||||| ||||||| |||| | ||  | ||||| ||||| |||||||||||||||||||||| || ||||||| |||||    
T  24689995 acacaaaggcaattaagcacacataaatacatatatacacatataataaataattaaaataattctatcgaaaaatgggct 24689915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 21654964 - 21655047
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    |||||||| | |||| || ||||| | ||||  |||||| |||||||||||||||||||| |||||| |||| |||||| ||||    
T  21654964 tacacacagatacaaatagtcacacacaagcgcatataatcacacataataaataattaagataattttagcaaaaaacaggct 21655047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 21909460 - 21909410
Alignment:
Q  51 atataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    ||||||||||| |||||||||||||||||||||| || | ||||| |||||    
T  21909460 atataaacacatataataaataattaaaataattctatctaaaaatgggct 21909410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 77997 - 78076
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacg 97  Q
    |||||||| |||||| |||||||||| |||||  |||||| ||||||||||||||||||||| |||| ||||||||||||    
T  77997 tacacacacagacaaataatcacatacaagcacctataaatacacataataaataattaaaagaattctagcgaaaaacg 78076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 204159 - 204092
Alignment:
Q  34 taatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    |||||||| | || ||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  204159 taatcacacacaaacatatataaacacacataataaataattaaaataattctaacgaaaaacgggct 204092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 16571919 - 16572000
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    |||| ||| |||||||||||||||||  || | ||||||| |||||||||||||||||||| |||| |||||||||||||||    
T  16571919 tacatacatagacaattaatcacatacgaggacatataaatacacataataaataattaaattaatcatagcgaaaaacggg 16572000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 21982714 - 21982793
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacg 97  Q
    |||||||||||| || |||||| ||| ||||| |||||| |||||||||||||||| |||||||||| || |||||||||    
T  21982714 tacacacaaagataaataatcatatacaagcacatataagcacacataataaataaataaaataattctaacgaaaaacg 21982793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 28801555 - 28801630
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaa 94  Q
    |||||||| |||||| || ||| ||| ||||| ||||||||||||||||||| |||||||||||||| |||||||||    
T  28801555 tacacacagagacaaata-tcatatacaagcacatataaacacacataataattaattaaaataattctagcgaaaa 28801630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 9273388 - 9273466
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaac 96  Q
    |||||||| ||||||||||||| | | || |||||| ||||| |||||||||| ||||||| ||||| |||| ||||||    
T  9273388 tacacacagagacaattaatcaaacataaacatatagaaacaaacataataaacaattaaattaattctagctaaaaac 9273466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 11777004 - 11777046
Alignment:
Q  53 ataaacacacataataaataattaaaataattatagcgaaaaa 95  Q
    |||||||||||||||||||| ||||||||||| ||||||||||    
T  11777004 ataaacacacataataaatagttaaaataattctagcgaaaaa 11777046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 16684900 - 16684957
Alignment:
Q  45 aagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggcta 102  Q
    ||||| ||||||||||| | || |||||| |||||||||| |||||||||||||||||    
T  16684900 aagcacatataaacacataaaacaaataaataaaataattctagcgaaaaacgggcta 16684957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 15712175 - 15712258
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacaca--taataaataattaaaataattatagcgaaaaacggg 99  Q
    ||||||||||| |||||||||||| | |||||  |||||||||| |   ||||||||| |||||||||| || |||||||||||    
T  15712175 tacacacaaaggcaattaatcacacacaagcacttataaacacataataaataaataaataaaataattctaacgaaaaacggg 15712258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 9253420 - 9253495
Alignment:
Q  21 acacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaac 96  Q
    ||||| ||||||||||||| | | || |||||||||||| ||||||||||| ||| || ||||| |||| ||||||    
T  9253420 acacagagacaattaatcatacataaacatatataaacaaacataataaatcatttaattaattctagctaaaaac 9253495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 9567330 - 9567397
Alignment:
Q  27 agacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaa 94  Q
    |||||| |||||||||| |  || |||||| |||||||||||| |||||||||||||| ||| |||||    
T  9567330 agacaaataatcacatacagacacatataaccacacataataattaattaaaataattctagtgaaaa 9567397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 9652752 - 9652827
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaa 95  Q
    |||||||| ||||||||| ||||||| ||||| ||||||  |||||||| || |||||||||||| | || |||||||    
T  9652752 tacacacagagacaattagtcacataaaagcacatataa--acacataaaaattaattaaaataaatctaacgaaaaa 9652827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 23269315 - 23269250
Alignment:
Q  36 atcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    |||||| | ||||| |||||||||||||  | || |||||||||||| ||||||||||| ||||||    
T  23269315 atcacacacaagcacatataaacacacaataaaagtaattaaaataaatatagcgaaaatcgggct 23269250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 202282 - 202204
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacg 97  Q
    |||||||| |||||| || ||||||| ||||| ||||||| |||||||||||||||||||||||||| || |||||||||    
T  202282 tacacacagagacaaata-tcacatacaagcacatataaatacacataataaataattaaaataattctatcgaaaaacg 202204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 17780 - 17701
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgg 98  Q
    ||||||||||||||| |||||||| | |||   |||||| |||| |||||||||||||||||||||| |||||||||||||    
T  17780 tacacacaaagacaaataatcacacacaagtgcatataa-cacatataataaataattaaaataattctagcgaaaaacgg 17701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 19661 - 19737
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaa 94  Q
    ||||||||  |||||||| |||| || ||||| ||||||||||||||||||| |||||||||||||| ||| |||||    
T  19661 tacacacagtgacaattattcacttacaagcagatataaacacacataataattaattaaaataattctagggaaaa 19737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 19822 - 19897
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaa 93  Q
    ||||||||  |||||||||||||| | || || ||||||||||| |||||||||||||||||||||| || |||||    
T  19822 tacacacatggacaattaatcacacataaacacatataaacacatataataaataattaaaataattctaacgaaa 19897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 370770 - 370687
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    ||||||||  |||||||||||||| | || ||  |||||||||| |||||||| ||||||||||||| |||||||||| |||||    
T  370770 tacacacagggacaattaatcacacataaacacgtataaacacatataataaacaattaaaataattctagcgaaaaatgggct 370687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 13967 - 14031
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataa 82  Q
    |||||||| || |||||||||||||||||||| ||||||||| | |||||||  |||||||||||    
T  13967 tacacacagaggcaattaatcacatagaagcacatataaacatatataataatgaattaaaataa 14031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 42423 - 42367
Alignment:
Q  45 aagcatatataaacacacataataaataattaaaataattatagcgaaaaacgggct 101  Q
    ||||| ||| || |||| |||||||||||||||||||||| ||||||||||||||||    
T  42423 aagcacatacaaccacatataataaataattaaaataattctagcgaaaaacgggct 42367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 8755 - 8817
Alignment:
Q  32 attaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaa 94  Q
    |||||||||||| ||||||| |||||||||||||||||  ||| ||||||| | |||||||||    
T  8755 attaatcacatacaagcataaataaacacacataataacaaataaaaataaatctagcgaaaa 8817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0772 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0772
Description:

Target: scaffold0772; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 2187 - 2111
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaa 95  Q
    |||||||| ||||||||||||||||| ||||| ||||||||| | |||| ||||||| ||||||| | || |||||||    
T  2187 tacacacagagacaattaatcacatataagcacatataaacatatataa-aaataataaaaataaatgtaacgaaaaa 2111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 151271 - 151223
Alignment:
Q  51 atataaacacacataataaataattaaaataattatagcgaaaaacggg 99  Q
    ||||||||| |||||| || ||||||||||||||||||| |||||||||    
T  151271 atataaacatacataaaaattaattaaaataattatagcaaaaaacggg 151223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 155616 - 155658
Alignment:
Q  53 ataaacacacataataaataattaaaataattatagcgaaaaa 95  Q
    ||||||||  |||||||||||||||||||||| ||||||||||    
T  155616 ataaacacgtataataaataattaaaataattctagcgaaaaa 155658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 93
Target Start/End: Original strand, 109106 - 109148
Alignment:
Q  51 atataaacacacataataaataattaaaataattatagcgaaa 93  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||    
T  109106 atataaacacatataataattaattaaaataattctagcgaaa 109148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 10303 - 10348
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacaca 63  Q
    |||||||| ||||||||||||||| | ||||| |||||||||||||    
T  10303 tacacacatagacaattaatcacagacaagcacatataaacacaca 10348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 11826 - 11886
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaa 79  Q
    ||||||||||| |||||||||||||  ||||| ||||||||||| || | ||||||||||||    
T  11826 tacacacaaaggcaattaatcacatttaagcagatataaacacatatta-aaataattaaaa 11886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 73550 - 73628
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataattaaaataattatagcgaaaaacgg 98  Q
    |||||||| | |||| |||| ||| | ||||| |||||||||||||  |||||||  |||||||||| |||||||||||||    
T  73550 tacacacagaaacaaataatgacacacaagcacatataaacacaca--ataaatatataaaataattctagcgaaaaacgg 73628  T

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Target: scaffold0013 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 6523 - 6439
Alignment:
Q  18 tacacacaaagacaattaatcacatagaagcatatataaacacacataataaataatt-aaaataattatagcgaaaaacgggcta 102  Q
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T  6523 tacacacataggcaattaatcacatacgagcataaacaaacacacataa-aaacaattaaaaataaatctagcgaaaatcgggcta 6439  T

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