View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16695_low_10 (Length: 428)
Name: NF16695_low_10
Description: NF16695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16695_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 23 - 412
Target Start/End: Complemental strand, 21637158 - 21636768
Alignment:
| Q |
23 |
tatatataactaaaatcatgtcatctcctaatcctcgagttatttttggttggtgattgattactaagcataaggaaaggtagtggcctagtggggaact |
122 |
Q |
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| T |
21637158 |
tatatataactaaaatcatgtcatctcctaatcctcgagtcatttttggttggtgattgattactaagcataaggaaaggtagtggcctagtggggaact |
21637059 |
T |
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| Q |
123 |
aaataagcaatctcttgccgtttgtggaaaattttgttagggcaaaggacataatcgagccaattannnnnnnnaa-tttcattttataagcaaagaact |
221 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |
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| T |
21637058 |
aaataagcaatctcttgccgtttgtagaaaattttgttagggcaaaggacacaatcgagccaattattttttttaaatttcattttataagcaaagaact |
21636959 |
T |
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| Q |
222 |
ttattaaagggagcattagagtactccaaaaccatctacaaacaaataaataaaatcaacaacgatccatacatgcaagaggtaacatcccgatctattt |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
21636958 |
ttattaaagggagcattagagtactccaaaaccatctacaaacaaataaataaaatcaacaacgatccatacatgcaagaggttacatccagatctattt |
21636859 |
T |
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| Q |
322 |
cctatcctataacaaactttttgttttaatagaaaaaagtttaaattagttagactttggaagtttaccatcaaagatgttttacattaac |
412 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21636858 |
cctatcctataacaaactttttgtttttatagaaaaaagtttaaattagttagactttggaagtttaccatcaaagatgttttacattaac |
21636768 |
T |
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