View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16695_low_15 (Length: 249)
Name: NF16695_low_15
Description: NF16695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16695_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 5329633 - 5329414
Alignment:
| Q |
14 |
agaataaattggagagacattgacaatttgaagactaaattgatagtttattcgtttatttcccaaaataaactaaagaagcattaccagtacctttttg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329633 |
agaataaattggagagacattgacaatttgaagactaaattgatggtttattcgtttatttcccaaaataaactaaagaagcattaccagtacctttttg |
5329534 |
T |
|
| Q |
114 |
gttgcacccaactcctgttcaagagtactgactctggttagagcattattaagcatttcctctttttctggaggcatgacaggcttaacactgagaacag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329533 |
gttgcacccaactcctgttcaagagtactgactctggttagagcattattaagcatttcctctttttctggaggcatgacaggcttaacactgagaacag |
5329434 |
T |
|
| Q |
214 |
tgactttctcttcaagttca |
233 |
Q |
| |
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|||||||||||||||||||| |
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| T |
5329433 |
tgactttctcttcaagttca |
5329414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 54775796 - 54775577
Alignment:
| Q |
14 |
agaataaattggagagacattgacaatttgaagactaaattgatagtttattcgtttatttcccaaaataaactaaagaagcattaccagtacctttttg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775796 |
agaataaattggagagacattgacaatttgaagactaaattgatggtttattcgtttatttcccaaaataaactaaagaagcattaccagtacctttttg |
54775697 |
T |
|
| Q |
114 |
gttgcacccaactcctgttcaagagtactgactctggttagagcattattaagcatttcctctttttctggaggcatgacaggcttaacactgagaacag |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775696 |
gttgcacccaactcctgttcaagagtactgactctggttagagcattattaagcatttcctctttttctggaggcatgacaggcttaacactgagaacag |
54775597 |
T |
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| Q |
214 |
tgactttctcttcaagttca |
233 |
Q |
| |
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|||||||||||||||||||| |
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| T |
54775596 |
tgactttctcttcaagttca |
54775577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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