View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16695_low_17 (Length: 237)
Name: NF16695_low_17
Description: NF16695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16695_low_17 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0363 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 38242289 - 38242525
Alignment:
| Q |
1 |
caacagaaagaaaacagaaaaataaacagaagcagtagacccccaaaataccaatcaagggaatatgtaatttggtagtccacatctatccctaaagaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||| ||||||| |
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| T |
38242289 |
caacagaaagaaaacagaaaaataaacagaagcagtagaaccccaaaaaaccaatcaagggaatatttaatttggtagtccacatctttcccaaaagaat |
38242388 |
T |
|
| Q |
101 |
ttaagacgcacacccgtgggaagagtgtctatccaaacgactccggctatagcgtgacccatagatggtgat-gtggtccaataataaagagagtgttta |
199 |
Q |
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| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
38242389 |
tcaagacgcacacccgtgggaagagtgtctatccaaacgacaccggctatagcgtgacccatagatggtgatagtggtccaataataaagagagtgctta |
38242488 |
T |
|
| Q |
200 |
atggagagtgaccaagcgattgtccctagtattgtcct |
237 |
Q |
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||||||||||||||||| |||||||||| ||||||||| |
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| T |
38242489 |
atggagagtgaccaagc-attgtccctaatattgtcct |
38242525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 20632384 - 20632225
Alignment:
| Q |
7 |
aaagaaaacagaaaaataaacagaagcagtagacccccaaaataccaatcaagggaatatgtaatttggtagtccacatctatccctaaagaatttaaga |
106 |
Q |
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|||||||||||| ||| ||||||| || |||||| |||||| || ||||||| | || | ||||| || |||||| |||||||||||||||||| |||| |
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| T |
20632384 |
aaagaaaacagagaaaataacagaaacaatagacctccaaaa-acaaatcaagagcatctataattcggaagtccatatctatccctaaagaattcaaga |
20632286 |
T |
|
| Q |
107 |
cgcacacccgtgggaagagtgtctatccaaacgactccggctatagcgtgacccatagatg |
167 |
Q |
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| T |
20632285 |
ctcacactcgtaggaagagtgtctaaccaaacgacaccagctatgtcatgacccaaagatg |
20632225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 15129744 - 15129903
Alignment:
| Q |
7 |
aaagaaaacagaaaaataaacagaagcagtagacccccaaaataccaatcaagggaatatgtaatttggtagtccacatctatccctaaagaatttaaga |
106 |
Q |
| |
|
|||||||||||| ||| |||| || || |||||| |||||| || ||| ||| |||| | |||| ||| ||||||||||||||||||||||||| |||| |
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| T |
15129744 |
aaagaaaacagagaaaataacataaacaatagacctccaaaa-acaaatgaagagaatctataatctggaagtccacatctatccctaaagaattcaaga |
15129842 |
T |
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| Q |
107 |
cgcacacccgtgggaagagtgtctatccaaacgactccggctatagcgtgacccatagatg |
167 |
Q |
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| ||||| ||| ||||||||||||| ||||||||| || ||||| | ||||||| ||||| |
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| T |
15129843 |
ctcacactcgtaggaagagtgtctaaccaaacgacaccagctatgtcatgacccaaagatg |
15129903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 3546859 - 3546904
Alignment:
| Q |
54 |
atcaagggaatatgtaatttggtagtccacatctatccctaaagaa |
99 |
Q |
| |
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|||| |||||| |||||||||| |||||||||||||||||| |||| |
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| T |
3546859 |
atcatgggaatctgtaatttggaagtccacatctatccctatagaa |
3546904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 5456 - 5598
Alignment:
| Q |
7 |
aaagaaaacagaaaaataaacagaagcagtagacccccaaaataccaatcaagggaatatgtaatttggtagtccacatctatccctaaagaatttaaga |
106 |
Q |
| |
|
|||||||||||| ||| ||||||| || |||||| |||||| || ||||||| | || | ||||| || ||||||||||||||||||||||||| |||| |
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| T |
5456 |
aaagaaaacagagaaaataacagaaacaatagacctccaaaa-acaaatcaagagcatctataattcggaagtccacatctatccctaaagaattcaaga |
5554 |
T |
|
| Q |
107 |
cgcacacccgtgggaagagtgtctatccaaacgactccggctat |
150 |
Q |
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| | ||| ||| ||||||||||||| ||||||||| || ||||| |
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| T |
5555 |
ctcgcactcgtaggaagagtgtctaaccaaacgacaccagctat |
5598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 14413255 - 14413113
Alignment:
| Q |
7 |
aaagaaaacagaaaaataaacagaagcagtagacccccaaaataccaatcaagggaatatgtaatttggtagtccacatctatccctaaagaatttaaga |
106 |
Q |
| |
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|||||||||||| ||| ||||||| || |||||| |||||| || ||||||| | || | ||||| || ||||||||||||||||||||||||| |||| |
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| T |
14413255 |
aaagaaaacagagaaaataacagaaacaatagacctccaaaa-acaaatcaagagcatctataattcggaagtccacatctatccctaaagaattcaaga |
14413157 |
T |
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| Q |
107 |
cgcacacccgtgggaagagtgtctatccaaacgactccggctat |
150 |
Q |
| |
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| | ||| ||| ||||||||||||| ||||||||| || ||||| |
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| T |
14413156 |
ctcgcactcgtaggaagagtgtctaaccaaacgacaccagctat |
14413113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 3007450 - 3007565
Alignment:
| Q |
24 |
aaacagaagcagtagacccccaaaataccaatcaagggaatatgtaatttggtagtccacatctatccctaaagaatttaagacgcacacccgtgggaag |
123 |
Q |
| |
|
|||||||| || |||||| |||||| || |||||||| ||| |||| ||||| ||||||||||||||||||||||| | ||||| ||||| || |||||| |
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| T |
3007450 |
aaacagaaacaatagacctccaaaa-acaaatcaaggaaatctgtagtttggaagtccacatctatccctaaagaagtcaagactcacactcgagggaag |
3007548 |
T |
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| Q |
124 |
agtgtctatccaaacga |
140 |
Q |
| |
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||||| || |||||||| |
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| T |
3007549 |
agtgtttaaccaaacga |
3007565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 7190017 - 7189972
Alignment:
| Q |
54 |
atcaagggaatatgtaatttggtagtccacatctatccctaaagaa |
99 |
Q |
| |
|
|||| |||||| |||||||||| |||||||||||||||||| |||| |
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|
| T |
7190017 |
atcatgggaatctgtaatttggaagtccacatctatccctatagaa |
7189972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 20847 - 21001
Alignment:
| Q |
12 |
aaacagaaaaataaacagaagcagtagacccccaaaataccaatcaagggaatatgtaatttggtagtccacatctatccctaaagaatttaagacgcac |
111 |
Q |
| |
|
||||||||| | ||||| || ||| ||||| |||| | || |||||||||||| |||| || || |||||||||||||| |||||||| | ||||| || |
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| T |
20847 |
aaacagaaacaaaaacaaaaacagaagacctccaaga-acaaatcaagggaatctgtagttcgggagtccacatctatctctaaagaaatcaagactgac |
20945 |
T |
|
| Q |
112 |
acccgtgggaagagtgtctatccaaacgactccggctatagcgtgacccatagatg |
167 |
Q |
| |
|
|| ||| ||||||||||||| |||||| || || ||||| | ||||||||||||| |
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|
| T |
20946 |
actcgtaggaagagtgtctaaccaaacaacaccagctatgtcatgacccatagatg |
21001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 15942 - 15813
Alignment:
| Q |
7 |
aaagaaaacagaaaaataaacagaagcagtagacccccaaaataccaatcaagggaatatgtaatttggtagtccacatctatccctaaagaatttaaga |
106 |
Q |
| |
|
|||||||||||||||| |||| || ||| ||||| ||||||| |||||||||||| ||||| || |||||||||||||||| |||||| | |||| |
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|
| T |
15942 |
aaagaaaacagaaaaaataacaaaaacagaagacctccaaaat--caatcaagggaaacgataattcggaagtccacatctatcccgaaagaagtcaaga |
15845 |
T |
|
| Q |
107 |
cgcacacccgtgggaagagtgtctatccaaac |
138 |
Q |
| |
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| ||||| ||| || |||||||||| |||||| |
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|
| T |
15844 |
ctcacactcgtagggagagtgtctaaccaaac |
15813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 37803327 - 37803269
Alignment:
| Q |
166 |
tggtgatgtggtccaataataaagagagtgtttaatggagagtgaccaagcgattgtcc |
224 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||| || ||||||||||||| | ||||||| |
|
|
| T |
37803327 |
tggtgacgtggtccaatagtgaagagagtgttcaacggagagtgaccaaacaattgtcc |
37803269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 20970419 - 20970464
Alignment:
| Q |
54 |
atcaagggaatatgtaatttggtagtccacatctatccctaaagaa |
99 |
Q |
| |
|
|||| |||||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
20970419 |
atcatgggaatctgtaatttggaagtccacatctatccctatagaa |
20970464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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