View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16695_low_3 (Length: 614)
Name: NF16695_low_3
Description: NF16695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16695_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 15380735 - 15380961
Alignment:
| Q |
14 |
cacagagcagttatatcaattgggttgaaactttggaatctgaactatttcttataatgggtttttcttagtcaatctcctcattttggacagtatgctt |
113 |
Q |
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| T |
15380735 |
cacagagcagttatatcaattgggttgaaactttggaatttgaactatttcttataatgggtttttcttagtcaatctcctcattttggacagtatgctt |
15380834 |
T |
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| Q |
114 |
tcttctttcaacttgcacaagtcactttgatgggatcccacagttnnnnnnnntgttactagtagtaagttgaagctagctgcattgtgtggacttttgg |
213 |
Q |
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| T |
15380835 |
tcttctttcaacttgcacaagtcactttgatgggatcccacagttaaaaaaaatgttactggtagtaagttgaagctagctgcattgtgtggacttttgg |
15380934 |
T |
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| Q |
214 |
agtgtgcaatgcacgtgagtatgtgtg |
240 |
Q |
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| T |
15380935 |
agtgtgcaatgcacgtgagtatgtgtg |
15380961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 446 - 594
Target Start/End: Original strand, 15381183 - 15381334
Alignment:
| Q |
446 |
ggtttttggagcctttttcctgtgtgatgtgtattgaattcattaatagcaattataaattttatgatatatat---cttttcacatatctcctttactt |
542 |
Q |
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| T |
15381183 |
ggtttttggagcctttttcctgtgtgatgtgtattgaattcattaatagcaattataaattttattatatcttttcagttttcacatatctactttactt |
15381282 |
T |
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| Q |
543 |
tcattcattttatatatcagcttcttaattgacccttgaatgaattctgctc |
594 |
Q |
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| T |
15381283 |
tctttcattctatatatcagcttcttaattgacccttgaatgaattctgctc |
15381334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 15381025 - 15381086
Alignment:
| Q |
304 |
cctaactatacaggacccattatctggtgtccaacgtgtgtgatggaaacacgtatctatag |
365 |
Q |
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| T |
15381025 |
cctaactatacaggacccattatctggtgtccaacgtgtgtggtggaaacacgtatctatag |
15381086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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