View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16695_low_8 (Length: 460)
Name: NF16695_low_8
Description: NF16695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16695_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 30 - 445
Target Start/End: Complemental strand, 38767117 - 38766702
Alignment:
| Q |
30 |
gtttaaattcaaatcatacaagattataatagaatataaatcatatgagtgattgaagctaaacaaagattatgaatgattacagtccaaatcgtacaac |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38767117 |
gtttaaattcaaatcatacaagattataatagaatataaatcatatgagtgattgaagctaaacaaagattatgaatgattacagtccaaatcgtacaac |
38767018 |
T |
|
| Q |
130 |
ttgtcttagtatactactatttcagaaatcagaacattaaggactttatttcttttgtaattgaaataaaaccttcctatatttcctagaactagaatat |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38767017 |
ttgtcttagtatactactatttcagaaatcagaacattaaggactttatttcttttgtaattgaaataaaaccttcctatatttcctagaactagaatat |
38766918 |
T |
|
| Q |
230 |
gaatgataacagtccaaataacaacaaaaacaaaaacctatagtacccaatcaatgttacagggtgaaagatataattgacttgtgttttgggccaagaa |
329 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38766917 |
gaatgataatagtccaaataacaacaaaaacaaaaacctatagtacccaatcaatgttacagggtgaaagatataattgacttgtgttttgggccaagaa |
38766818 |
T |
|
| Q |
330 |
gttccttggtgatatatttgcattgaaatttactatccttaggaaaagaatatgacatatacaaatactccacaatgtgctgatgaaaattgctgcgatg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38766817 |
gttccttggtgatatatttgcattgaaatttactatccttaggaaaagaatatgacatatacaaatactccacaatgtgctgatgaaaattgctgcgatg |
38766718 |
T |
|
| Q |
430 |
ataaagtgtcgtaagt |
445 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
38766717 |
ataaagtgtcgtaagt |
38766702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University