View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16696_high_7 (Length: 428)
Name: NF16696_high_7
Description: NF16696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16696_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Original strand, 44995854 - 44996250
Alignment:
| Q |
17 |
aggttgcatttctcctatgtcccctgaagatgccaaacaatgtcacaatcaaattaaatcattcaataaaatcttcaaaacaaaagtttgagggtggaag |
116 |
Q |
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| T |
44995854 |
aggttgcatttctcctatgtcccctgaagatgccaaacaatgtcacaatcaaattaaatcattcaataaaatcttcaaaacaaaagtttgagggtggaag |
44995953 |
T |
|
| Q |
117 |
attaaatttcaattcaacctgtgtgaaaccatccatctactatggattcctttgttaactcagggtttttgtggtagccagagaaaactgatttccctct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44995954 |
attaaatttcaattcaacctgtgtgaaaccatccatctactatggattcctttgttaactcagggtttttgtggtagccagagaaaactgatttccctct |
44996053 |
T |
|
| Q |
217 |
aagacatatctcaccacatgaaggatttccaagaggattgtaacccatctctggaacttcttctagttgtatttcgttgtatatagatacaggaccaacg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44996054 |
aagacatatctcaccacatgaaggatttccaagaggattgtaacccatctctggaacttcttctagttgtatttcgttgtatatagatacaggaccaacg |
44996153 |
T |
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| Q |
317 |
gtaccaagcatgcacatttcatcaggaaatgcaagagtagttgacccacaagtttcagtcaaacctagattaaccatatataatgttagtacttcat |
413 |
Q |
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| T |
44996154 |
gtaccaagcatgcacatttcatcaggaaatgcaagagtagttgacccacaagtttcagtcaaacctagattaaccatatataatgttagtacttcat |
44996250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 127 - 391
Target Start/End: Complemental strand, 38768284 - 38768020
Alignment:
| Q |
127 |
aattcaacctgtgtgaaaccatccatctactatggattcctttgttaactcagggtttttgtggtagccagagaaaactgatttccctctaagacatatc |
226 |
Q |
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||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| || || ||||| |||| |||||| ||| ||||| | ||||||| |
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| T |
38768284 |
aattcaacctgtgtgaaaccatccatctattatggcttcttttgttaactcaggattcttatggtaaccagtgaaaacacttttgcctctgacacatatc |
38768185 |
T |
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| Q |
227 |
tcaccacatgaaggatttccaagaggattgtaacccatctctggaacttcttctagttgtatttcgttgtatatagatacaggaccaacggtaccaagca |
326 |
Q |
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|| ||||||| ||| |||||||||||||||||||||| ||||||||||| || || | | ||| ||| ||| || |||| |||||| |||| |||| |
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| T |
38768184 |
tctccacatggcggagttccaagaggattgtaacccatgtctggaacttcctccagccgcaattcattgaatacagttacaacaccaacattacctagca |
38768085 |
T |
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| Q |
327 |
tgcacatttcatcaggaaatgcaagagtagttgacccacaagtttcagtcaaacctagattaacc |
391 |
Q |
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| T |
38768084 |
tgcacatttcatctggaaatgtaagagtagttggtccacatgtttctgtcaaacctggattaacc |
38768020 |
T |
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