View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16696_high_8 (Length: 396)
Name: NF16696_high_8
Description: NF16696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16696_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 377
Target Start/End: Complemental strand, 36682952 - 36682591
Alignment:
| Q |
10 |
attattctggtttattttgcatgagttctggtatgtttatgtcttgaatagttttcctcttcaatttttacaaacttaaatgtgaatcccttttgattgt |
109 |
Q |
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| T |
36682952 |
attattctgatttattttgcatgagttctggt----ttatgtcttcaatagttttcctcttcaatttttacaaacttaaatgtgaatcccttttgattgt |
36682857 |
T |
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| Q |
110 |
taaataacctacatgtgtagtttcagggtagagtaaaaagtaatttcagacacattgttgaagttcattattcaatgatcaatctattagaattagnnnn |
209 |
Q |
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| T |
36682856 |
taaataacctacatgtgtagtttcagggtagagtaaaaagtaatttcagacacattgttgaagttcattattcaatgatcaatctattagaattagttta |
36682757 |
T |
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| Q |
210 |
nnnnnnnnnnnaggggagttaaataataa--atgattacaatgagattgctttatatagcaggccatatatactattaataacctaatagtttgagtcaa |
307 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36682756 |
tttttatttttaggggagttaaataataattatgattacaatgagattgctttatatagcaggcc----atactattaataacctaatagtttgagtcaa |
36682661 |
T |
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| Q |
308 |
acaaactttgcctagtcaccaagtcctctaactaacttgacaactgtgtaactaactagacagttgtgtg |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36682660 |
acaaactttgcctagtcaccaagtcctctaactaacttgacaactgtgtaactaactagacagttgtgtg |
36682591 |
T |
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