View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16696_low_10 (Length: 269)
Name: NF16696_low_10
Description: NF16696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16696_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 27 - 254
Target Start/End: Complemental strand, 22805207 - 22804978
Alignment:
| Q |
27 |
ttttcattcacatgcccaagacacatgagtcagtctggctctgttggtgcacctagtagcagaaaaaa-tgttttagagtacccatt-gctagttagtaa |
124 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
22805207 |
ttttcattcacatgctcaagacacatgagtcagtctggctctgttggtgcaccttgtagcagaaaaaaatgttttagagtacccattagctagttagtaa |
22805108 |
T |
|
| Q |
125 |
aactacaacatatttgtatttttgtgccaaaagaaatcccatatcaagcataatcatccatctattccaagtgctgggccgattcctgcagaggtcagag |
224 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22805107 |
aactacaacatgtttgtatttttgtgccaaaagaaatcccatatcaagcataatcatccatctattccaagtgctgggccgattcctgcagaggtcagag |
22805008 |
T |
|
| Q |
225 |
cgtacttgatcccattcaatcgtttctgtg |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
22805007 |
cgtacttgatcccattcaatcgtttctgtg |
22804978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 169
Target Start/End: Complemental strand, 732790 - 732709
Alignment:
| Q |
88 |
gaaaaaatgttttagagtacccattgctagttagtaaaactacaacatatttgtatttttgtgccaaaagaaatcccatatc |
169 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||| ||| || ||| |||||||||||||||| | |||||| |||||||| |
|
|
| T |
732790 |
gaaaaaatgttttagatatcccatatctagtcagtagaacaacgacacatttgtatttttgtgcaataagaaaccccatatc |
732709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University