View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16696_low_11 (Length: 252)
Name: NF16696_low_11
Description: NF16696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16696_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 22697435 - 22697656
Alignment:
| Q |
17 |
atcgtaatattgcacccgcaattgcagttgcgcagcctaacttataagcatgaatagaatatcaaccacttattttcttacaacaattgccatattttac |
116 |
Q |
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| T |
22697435 |
atcgtaatattgcacccgcaattgcagttgcgcagcgtaacttataagcatgaatagaatatcaaccacttattttcttacaacaattgccatattttac |
22697534 |
T |
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| Q |
117 |
tttactctataaaatgagaaaaatctcaaacataaatagagaattttatactaacctgatatatagaactaatgggaatttggattgatccttcatggca |
216 |
Q |
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| T |
22697535 |
tttactctataaaatgagaaaaatctcaaacataaatagagaattttatactaacctgatatatagaactaatgggaatttggattgatccttcatggaa |
22697634 |
T |
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| Q |
217 |
gaatagacatttggaaaaactg |
238 |
Q |
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| T |
22697635 |
gagtagacatttggaaaaactg |
22697656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 65 - 238
Target Start/End: Original strand, 22685646 - 22685819
Alignment:
| Q |
65 |
catgaatagaatatcaaccacttattttcttacaacaattgccatattttactttactctataaaatgagaaaaatctcaaacataaatagagaatttta |
164 |
Q |
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||||| ||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |
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| T |
22685646 |
catgagtagaatatcaagcacttattttcttgcaacaattgcaatattttactttactctataaaatgagaaaaatcctaaatttaaatagagaaattta |
22685745 |
T |
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| Q |
165 |
tactaacctgatatatagaactaatgggaatttggattgatccttcatggcagaatagacatttggaaaaactg |
238 |
Q |
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| T |
22685746 |
tgctaacctgatatatagaactaatgggaatttggattgatccttcatggaagagtagacgtttggaaaaactg |
22685819 |
T |
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