View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16696_low_13 (Length: 248)
Name: NF16696_low_13
Description: NF16696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16696_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 22697399 - 22697158
Alignment:
| Q |
1 |
tgtggccgcaaatgtctgcattttaccacaatatagaggttcgcacttcgcagcataagcacaaatgcgacctctaccgtgattttaaaccatgatgctg |
100 |
Q |
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| T |
22697399 |
tgtggccgcaaatgtctgcattttaccgcaatatagaggttcgcacttcgcagcataagcacaaatgtgacctctaccgtgattttaaaccatgatgctg |
22697300 |
T |
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| Q |
101 |
ctcattaattttggcataactaaaggaacaaaccttcaatagaagttgttttgacattaataactacta-atattttctttgtcatagtcaaatattagt |
199 |
Q |
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| T |
22697299 |
ctcattaattttggcataactaaaggaataaaccttcaacagaagttgttttgacattaataactactatattttttttttgtcatagtcaaatattagt |
22697200 |
T |
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| Q |
200 |
gcagttttgctcaagagcaattctcattcattttatattctt |
241 |
Q |
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| T |
22697199 |
gcagttttgctcaagagcaattctcattcattttattttctt |
22697158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 22685118 - 22685035
Alignment:
| Q |
155 |
cattaataactactaatattttctttgtcatagtcaaatattagtgcagttttgctcaagagcaattctcattcattttatattctt |
241 |
Q |
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| T |
22685118 |
cattaataactactacttttttttt---catagtcaaatattagtgcagttttactgaagaacaattctcattaattttattttctt |
22685035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 22685201 - 22685117
Alignment:
| Q |
54 |
cataagcacaaatgcgacctctaccgtgattttaaaccatgatgctgctcattaattttggcataactaaaggaacaaaccttca |
138 |
Q |
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| T |
22685201 |
cataaccacaaatacgacctcaatcgcagtttaaaaccatgatgctattcattaattttggcataattaaaggaaccaaccttca |
22685117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 20742913 - 20742945
Alignment:
| Q |
13 |
tgtctgcattttaccacaatatagaggttcgca |
45 |
Q |
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| T |
20742913 |
tgtctgcattttaccacaatataaaggttcgca |
20742945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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