View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16696_low_15 (Length: 238)
Name: NF16696_low_15
Description: NF16696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16696_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 41691633 - 41691452
Alignment:
| Q |
42 |
aatgaaaatatgcaatccaccaatgaaagttattcggttgtattcatgaaaattcttttcataagattgagtattttcctttttnnnnnnncttcaactt |
141 |
Q |
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| T |
41691633 |
aatgaaaatatgcaatccaccaatgaaagttattcggttgtattcatgaaaattcttttcataagattgagtattttcctttttaaaaaaacttcaactt |
41691534 |
T |
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| Q |
142 |
tagtagacatgttcctatatatgatctgtgtctcacaccatctcattctatttgtatcccatttttctgaatgtgttgtgac |
223 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41691533 |
tagtagacatgttcctatatatgatctgtgtctcactccatctcattctatttgtatcccatttttctgaatgtgttgtgac |
41691452 |
T |
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