View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16696_low_16 (Length: 226)
Name: NF16696_low_16
Description: NF16696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16696_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 444833 - 445051
Alignment:
| Q |
2 |
ttcagcctaaatattatgattttgtatcggcatctctcagcatcaagactgcggctttatcattccttgcaggtggttgaaaaggattgtgatgattcag |
101 |
Q |
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| T |
444833 |
ttcagcctaaatattatgattttgtatcggcatctctcagcatcaagactgcggctttatcattcgttgcaggtggttgaaaaggattgtgatgattcag |
444932 |
T |
|
| Q |
102 |
acagcgatgatgagttgcctcatttgaaggtgtgattaaatcatagtatttgaatcgatgttgnnnnnnngttaagattagtggctttcatattaagttg |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
444933 |
acagcgatgatgagttgcctcatttgaaggtgtgattaaatcatagtatttgaatcgatgttgtttttttgttaagattagtggctttcatattaagttg |
445032 |
T |
|
| Q |
202 |
tctgtaattgatgatgtcc |
220 |
Q |
| |
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||||||||||||| ||||| |
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| T |
445033 |
tctgtaattgatggtgtcc |
445051 |
T |
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