View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16696_low_2 (Length: 540)

Name: NF16696_low_2
Description: NF16696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16696_low_2
NF16696_low_2
[»] chr4 (20 HSPs)
chr4 (1-522)||(31503216-31503736)
chr4 (3-522)||(31478068-31478583)
chr4 (349-520)||(31471913-31472084)
chr4 (69-233)||(31527183-31527347)
chr4 (88-238)||(31157993-31158143)
chr4 (357-522)||(31484239-31484404)
chr4 (357-522)||(31491226-31491391)
chr4 (357-520)||(31028076-31028239)
chr4 (350-523)||(31498451-31498624)
chr4 (397-522)||(31526927-31527052)
chr4 (87-227)||(31483987-31484127)
chr4 (359-522)||(31148811-31148974)
chr4 (71-184)||(31149173-31149286)
chr4 (360-522)||(31157713-31157875)
chr4 (70-164)||(31498051-31498145)
chr4 (73-238)||(31490948-31491113)
chr4 (70-173)||(31018602-31018705)
chr4 (97-167)||(31033070-31033140)
chr4 (70-233)||(31028425-31028588)
chr4 (357-475)||(31018028-31018146)
[»] chr6 (28 HSPs)
chr6 (349-522)||(33058065-33058238)
chr6 (82-244)||(33401374-33401536)
chr6 (353-522)||(33304986-33305155)
chr6 (69-197)||(31561967-31562095)
chr6 (349-518)||(31562220-31562389)
chr6 (351-522)||(33263137-33263308)
chr6 (69-244)||(33263391-33263566)
chr6 (360-522)||(33272306-33272468)
chr6 (349-522)||(33359222-33359393)
chr6 (86-193)||(33286350-33286457)
chr6 (89-244)||(33305237-33305392)
chr6 (424-522)||(9167275-9167373)
chr6 (360-522)||(33388572-33388734)
chr6 (86-184)||(33388855-33388953)
chr6 (84-187)||(33643778-33643881)
chr6 (352-522)||(33399529-33399699)
chr6 (139-233)||(33410704-33410798)
chr6 (86-155)||(9167609-9167678)
chr6 (349-522)||(33286048-33286221)
chr6 (85-233)||(33058328-33058476)
chr6 (348-522)||(33410465-33410636)
chr6 (424-522)||(33644074-33644172)
chr6 (123-244)||(33359469-33359590)
chr6 (99-226)||(33272571-33272698)
chr6 (122-180)||(13610357-13610415)
chr6 (362-520)||(28869610-28869768)
chr6 (464-522)||(33399457-33399515)
chr6 (438-518)||(13614410-13614490)
[»] scaffold1408 (2 HSPs)
scaffold1408 (349-522)||(1155-1328)
scaffold1408 (98-238)||(1388-1528)
[»] scaffold0428 (2 HSPs)
scaffold0428 (349-522)||(6901-7074)
scaffold0428 (98-238)||(7134-7274)
[»] chr2 (2 HSPs)
chr2 (84-155)||(17439996-17440067)
chr2 (349-522)||(17440228-17440401)


Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 31503216 - 31503736
Alignment:
Q  1 atgatagtcgaacacttgtctaaaatgagacatcttagactgctcatcatatgcagtcatgtgaacacctcaggaagcctcaattgtctttctaacgaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  31503216 atgatagtcgaacacttgtctaaaatgagacatcttagactgctcatcatctggagtcatgtgaacacctcaggaagcctcaattgtctttctaacgaat 31503315  T
Q  101 taagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttgagttgatcttgaagagtagcagcatcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31503316 taagatatgttgaatggagtgaatatcctttcaagtatttgccgtcaagttttcagccaaatcaacttgttgagttgatcttgaagagtagcagcatcga 31503415  T
Q  201 acaattatcggaagacaagaaggtactctaaatcctctaattatgacnnnnnnnnnccttaaaaatataaacaagttaaaaacaatttatttatttcccc 300  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  31503416 acaattatgggaagacaagaaggtactctaaatcctctaattatgac--tttttttccttaaaaatataaacaagttaaaaacaatttatttatttcccc 31503513  T
Q  301 attttaaggtcaacaaacaaaagaaaataatgcctctag-nnnnnnnncttttcatgtcacagtatctgcgcaatttgagaaatttggatctaagccact 399  Q
    |||||||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31503514 attttaaggtaaacaaacaaaagaaaataatgcctctagtttttttttcttttcatgtcacagtatctgcgcaatttgagaaatttggatctaagccact 31503613  T
Q  400 ccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagcggctagatctggaaggatgtataaaacttgtgcagatagatccatctat 499  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31503614 ccaaaaatttaataaagatgccacattttggagagttcccgaaccttgagcggctagatctggaaggatgtataaaacttgtgcagatagatccatctat 31503713  T
Q  500 ttgtcttctaacaaagcttgttt 522  Q
    | |||||||||||||||||||||    
T  31503714 tggtcttctaacaaagcttgttt 31503736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 522
Target Start/End: Original strand, 31478068 - 31478583
Alignment:
Q  3 gatagtcgaacacttgtctaaaatgagacatcttagactgctcatcatatgcagtcatgtgaacacctcaggaagcctcaattgtctttctaacgaatta 102  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |  |  ||| ||||||||||||||||| ||| | |||| ||||||| ||| ||    
T  31478068 gatagtcgaacacttgtctaaaatgagacatcttagattgctcatcgtcaggtgtcctgtgaacacctcaggaaaccttagttgtttttctaaagaacta 31478167  T
Q  103 agatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttgagttgatcttgaagagtagcagcatccaac 202  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||| |  | |||||||||||||| ||||||||| ||  |||||||||  |||    
T  31478168 agatatgttgagtggagtgaatatcctttcaagtatttgccatcgagttttgactctaatcaacttgttgaattgatcttggagtatagcagcatagaac 31478267  T
Q  203 aattatcggaagacaagaaggtactctaaatcctctaattatgacnnnnnnnnncctta-aaaatataaacaagttaaaaacaatttatttatttcccca 301  Q
    | |||| | ||| ||| |||||||| ||| || ||| ||||| |            ||| ||||||||||||| ||| ||| |||||||| |||||||||    
T  31478268 agttatggaaaggcaa-aaggtactataactc-tcttattattattttt-------ttataaaatataaacaaattagaaataatttatt-atttcccca 31478357  T
Q  302 tttt-aaggtcaac----aaacaaaagaaaataatgcctctagnnnnnnnncttttcatgtcacagtatctgcgcaatttgagaaatttggatctaagcc 396  Q
    |||| ||||| |||    |||||||||||||||||||||||||         | ||||||| |||| ||||||  || |||||||||||  |||||||||    
T  31478358 ttttgaaggtaaacttataaacaaaagaaaataatgcctctagttttttatttcttcatgttacagcatctgcctaaattgagaaatttaaatctaagcc 31478457  T
Q  397 actccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagcggctagatctggaaggatgtataaaacttgtgcagatagatccatc 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  31478458 actccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagcggctagatctggaaggatgtataaaacttgtgcagttggatccatc 31478557  T
Q  497 tatttgtcttctaacaaagcttgttt 522  Q
    | || ||||| |||| ||||||||||    
T  31478558 tcttagtcttttaacgaagcttgttt 31478583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 349 - 520
Target Start/End: Original strand, 31471913 - 31472084
Alignment:
Q  349 ttttcatgtcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttga 448  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  31471913 ttttcatgtcacagtatctgcccaatttgagaaatttggatctaagctactcccaaaatttcataaagatgccgcattttggagagttcccaaatcttga 31472012  T
Q  449 gcggctagatctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgt 520  Q
    ||||||||||||||||||||||||||||||||||||| | ||| | |||||| | ||||| |||||||||||    
T  31472013 gcggctagatctggaaggatgtataaaacttgtgcagttggattcgtctattaggcttcttacaaagcttgt 31472084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 69 - 233
Target Start/End: Complemental strand, 31527347 - 31527183
Alignment:
Q  69 ctcaggaagcctcaattgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaactt 168  Q
    |||||||||| |  ||||| ||||||| ||||||||||||||||| ||| | ||||||||||||| ||||||||||||||||||||| ||  | ||||||    
T  31527347 ctcaggaagcttggattgtatttctaatgaattaagatatgttgagtggcgggaatatcctttcatgtatttgccatcaagttttcaaccctaccaactt 31527248  T
Q  169 gttgagttgatctt-gaagagtagcagcatccaacaattatcggaagacaagaaggtactctaaat 233  Q
    |||||||||||||| ||||| |||||||||| ||||| ||| ||||| || ||||||| |||||||    
T  31527247 gttgagttgatcttggaaga-tagcagcatcaaacaactatgggaaggcacgaaggtaatctaaat 31527183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 88 - 238
Target Start/End: Complemental strand, 31158143 - 31157993
Alignment:
Q  88 ctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttgagttgatcttgaaga 187  Q
    ||||||||||| |||||||| || || ||| ||  |||||||||||||||||||||| || |||||||||| |||||||||||||| |||||| ||| |     
T  31158143 ctttctaacgagttaagatacgtagagtggggtagatatcctttcaagtatttgccagcatgttttcagcccaatcaacttgttgaattgatcatgaggc 31158044  T
Q  188 gtagcagcatccaacaattatcggaagacaagaaggtactctaaatcctct 238  Q
     ||||||| || ||||| ||| | |||||||||||||||| ||||| ||||    
T  31158043 atagcagcgtcaaacaactatggaaagacaagaaggtactataaattctct 31157993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 357 - 522
Target Start/End: Original strand, 31484239 - 31484404
Alignment:
Q  357 tcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagcggctag 456  Q
    |||||| |||||| ||||||||| | | | ||||||||| |||| | ||||||||| ||||||| | ||||||||||| |||| |||||||||||| ||     
T  31484239 tcacagaatctgcccaatttgaggactcttgatctaagctactctacaaatttaatcaagatgctagattttggagaggtcccaaatcttgagcggttaa 31484338  T
Q  457 atctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    | || ||||||||| ||||||||||| |||| |||| || ||||||||||| ||  ||||||||||    
T  31484339 accttgaaggatgtgtaaaacttgtggagatggatctatttatttgtcttccaaagaagcttgttt 31484404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 357 - 522
Target Start/End: Original strand, 31491226 - 31491391
Alignment:
Q  357 tcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagcggctag 456  Q
    ||||||||||||| ||||||||| ||| |||||||||||  ||| |||||| ||   | |||||||||||||| ||||||||| |||||| ||||||||     
T  31491226 tcacagtatctgcccaatttgaggaatctggatctaagctgctctaaaaatctagccacgatgccacattttgcagagttcccaaatcttaagcggctaa 31491325  T
Q  457 atctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    |||| ||||||||| |||  |||||||||||  || |||||||| | ||||||| | |||||||||    
T  31491326 atcttgaaggatgtgtaagccttgtgcagattaattcatctattggccttctaagagagcttgttt 31491391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 357 - 520
Target Start/End: Complemental strand, 31028239 - 31028076
Alignment:
Q  357 tcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagcggctag 456  Q
    ||||||||||||| |||||||| || | ||||||| |   |||||||| |  |||| ||||||||| ||||||||||| | || ||||||||||||||      
T  31028239 tcacagtatctgcccaatttgaaaactatggatctgatgtactccaaacacctaatcaagatgccaaattttggagaggttccaaatcttgagcggctga 31028140  T
Q  457 atctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgt 520  Q
    |||| || |||||| |||| |||||||| ||||||||||||||| ||||||| | |||||||||    
T  31028139 atctcgacggatgtgtaaatcttgtgcaaatagatccatctattggtcttctgagaaagcttgt 31028076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 350 - 523
Target Start/End: Original strand, 31498451 - 31498624
Alignment:
Q  350 tttcatgtcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttgag 449  Q
    ||||||||||||||||||||  ||||||| || ||||||||||||| ||||   | || |||||||| ||||| |||||||||||||||| |||||||||    
T  31498451 tttcatgtcacagtatctgccgaatttgataactttggatctaagctactcttcacatctaataaaggtgccaaattttggagagttcccaaatcttgag 31498550  T
Q  450 cggctagatctggaaggatgtataaaacttg-tgcagatagatccatctatttgtcttctaacaaagcttgtttc 523  Q
    |   || ||||||||||||||| |||| ||| ||| | | |||||||||||| | ||||||| |||| |||||||    
T  31498551 cacttaaatctggaaggatgta-aaaatttgttgcggttggatccatctattggacttctaagaaagattgtttc 31498624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 397 - 522
Target Start/End: Complemental strand, 31527052 - 31526927
Alignment:
Q  397 actccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagcggctagatctggaaggatgtataaaacttgtgcagatagatccatc 496  Q
    ||||||||| | |||||||  ||||| |||| |||||| |||| ||||||||||||||| ||||  |||||||| ||||||||| |||||||||||||||    
T  31527052 actccaaaagtctaataaaagtgccagatttcggagagatccctaatcttgagcggctaaatctcaaaggatgtgtaaaacttgagcagatagatccatc 31526953  T
Q  497 tatttgtcttctaacaaagcttgttt 522  Q
    |||| || |||||| ||| |||||||    
T  31526952 tattagtgttctaagaaaacttgttt 31526927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 227
Target Start/End: Original strand, 31483987 - 31484127
Alignment:
Q  87 tctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttgagttgatcttgaag 186  Q
    |||||||||| ||||||| || |||| ||||| || ||||||||||| |||||||||||||| ||||| ||| |||||||||||||| |||||| ||  |    
T  31483987 tctttctaaccaattaaggtacgttgcatggaatggatatcctttcatgtatttgccatcaaattttcggcccaatcaacttgttgaattgatcatggtg 31484086  T
Q  187 agtagcagcatccaacaattatcggaagacaagaaggtact 227  Q
      |||||||||| ||||| | | ||||| ||||||||||||    
T  31484087 gatagcagcatcaaacaactctgggaaggcaagaaggtact 31484127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 359 - 522
Target Start/End: Complemental strand, 31148974 - 31148811
Alignment:
Q  359 acagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagcggctagat 458  Q
    ||||||| |||  |||||||||| |||||||||||||||||| |||| | ||| |||||||||| ||||||||||| |||| |||||||||||  ||  |    
T  31148974 acagtatttgccgaatttgagaactttggatctaagccactcaaaaagtctaagaaagatgccaaattttggagaggtcccaaatcttgagcgtgtaagt 31148875  T
Q  459 ctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
     | ||||||||| | ||||| ||||| || | |||||||||| |  |||||| |||||||||||    
T  31148874 tttgaaggatgtgtgaaactggtgcaaatgggtccatctattggggttctaagaaagcttgttt 31148811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 31149286 - 31149173
Alignment:
Q  71 caggaagcctcaattgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgt 170  Q
    |||||| ||| ||| | |||||| |||| ||||||||||| || |||| |  |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  31149286 caggaaaccttaatggcctttctgacgagttaagatatgtcgagtggaatagatatcctttcaagtatttgccatcaagttttctgcctaatcaacttgt 31149187  T
Q  171 tgagttgatcttga 184  Q
     || ||||||||||    
T  31149186 cgaattgatcttga 31149173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 360 - 522
Target Start/End: Complemental strand, 31157875 - 31157713
Alignment:
Q  360 cagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagcggctagatc 459  Q
    |||||| ||| |||||||| || |||||||||||||||||| || ||| ||| |||| ||||| ||||||||||| | || ||||| ||   |||| |||    
T  31157875 cagtatttgcccaatttgaaaattttggatctaagccactcaaagaatctaagaaaggtgccagattttggagagatgccaaatctagaagagctaaatc 31157776  T
Q  460 tggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    |  |||| |||||||| ||||||||||| |||||||| ||| |  |||||| |||||||||||    
T  31157775 tcaaaggctgtataaagcttgtgcagattgatccatcaattggggttctaagaaagcttgttt 31157713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 31498051 - 31498145
Alignment:
Q  70 tcaggaagcctcaattgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatca 164  Q
    ||||| ||||||| ||||||||| ||| ||||||||||| |||| |||  |||||||||||||| |||||| ||||||| ||||||||| |||||    
T  31498051 tcaggcagcctcagttgtctttccaacaaattaagatattttgagtggcatgaatatcctttcatgtatttaccatcaaattttcagcctaatca 31498145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 238
Target Start/End: Original strand, 31490948 - 31491113
Alignment:
Q  73 ggaagcctcaattgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttg 172  Q
    |||||||| |||| |||||||||  ||||||||||| ||||||||  |||||||||||||  |||||| |||||||||| |||||   || |||||   |    
T  31490948 ggaagcctaaattatctttctaataaattaagatatcttgaatgggatgaatatcctttcttgtatttaccatcaagttctcagcttgatgaactttccg 31491047  T
Q  173 agttgatctt-gaagagtagcagcatccaacaattatcggaagacaagaaggtactctaaatcctct 238  Q
    | |||||||| | || |||||||||||  |||| ||| | |||||||||||||||| ||||| ||||    
T  31491048 aattgatcttagtag-gtagcagcatcacacaactatggaaagacaagaaggtactataaattctct 31491113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 173
Target Start/End: Complemental strand, 31018705 - 31018602
Alignment:
Q  70 tcaggaagcctcaattgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttg 169  Q
    ||||||||||||||||  ||||| || ||||| ||||||||||||||||    ||||||||||| |||||||||    ||||||||||| || |||||||    
T  31018705 tcaggaagcctcaattacctttcaaatgaattgagatatgttgaatggaacagatatcctttcacgtatttgcctaagagttttcagcccaaccaacttg 31018606  T
Q  170 ttga 173  Q
    ||||    
T  31018605 ttga 31018602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 31033140 - 31033070
Alignment:
Q  97 gaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaact 167  Q
    ||||| ||||||||||| |||| |||||||||||||| |||||||||  |||||||||| || ||||||||    
T  31033140 gaattgagatatgttgagtggactgaatatcctttcatgtatttgcctacaagttttcaccccaatcaact 31033070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 233
Target Start/End: Complemental strand, 31028588 - 31028425
Alignment:
Q  70 tcaggaagcctcaattgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttg 169  Q
    ||||||||||| |||| |||||| || ||||| |||||| || | ||||     |||||||||| || |||||||  |||||||||||| || || ||||    
T  31028588 tcaggaagcctgaattatctttcaaatgaattgagatattttaagtggacatgctatcctttcatgtgtttgccaaaaagttttcagcccaaccagcttg 31028489  T
Q  170 ttgag-ttgatcttgaagagtagcagcatccaacaattatcggaagacaagaaggtactctaaat 233  Q
    ||||  || || |||  | ||||||||||||||||| ||| ||||| |||||||||||| |||||    
T  31028488 ttgaactttat-ttgtggcgtagcagcatccaacaactatgggaaggcaagaaggtactataaat 31028425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 475
Target Start/End: Complemental strand, 31018146 - 31018028
Alignment:
Q  357 tcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagcggctag 456  Q
    ||||||||||| | ||||||||||| | ||||||| |  ||||||| |||  |||| ||| ||||| ||||||||||| | || |||||||||  |||      
T  31018146 tcacagtatctacccaatttgagaattatggatctgatgcactccagaaacctaatcaagctgccagattttggagaggttccaaatcttgagatgctga 31018047  T
Q  457 atctggaaggatgtataaa 475  Q
    |||||| ||||||| ||||    
T  31018046 atctggcaggatgtgtaaa 31018028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 349 - 522
Target Start/End: Complemental strand, 33058238 - 33058065
Alignment:
Q  349 ttttcatgtcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttga 448  Q
    |||||| |||||||||||| | |||||||||||  ||||||||| | ||||||| |||| ||  ||||||   | |||||||||||||||||||||||||    
T  33058238 ttttcacgtcacagtatcttcccaatttgagaacattggatctacgtcactccagaaatctagaaaagataatagattttggagagttcccgaatcttga 33058139  T
Q  449 gcggctagatctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    |||  ||||| |||||||||||||||| |||||  || | |||||||||||| | ||||||| |||||||||||    
T  33058138 gcgtttagatttggaaggatgtataaaccttgttgagttggatccatctattggacttctaagaaagcttgttt 33058065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 82 - 244
Target Start/End: Complemental strand, 33401536 - 33401374
Alignment:
Q  82 aattgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttgagttgatct 181  Q
    |||| |||||| |||||||||||||||||||| |||  ||||||||||||||||||||||||| |||||||||| || ||| ||||||| || |||||||    
T  33401536 aattttctttcaaacgaattaagatatgttgattggcatgaatatcctttcaagtatttgccaacaagttttcaccccaatgaacttgtagaattgatct 33401437  T
Q  182 tgaagagtagcagcatccaacaattatcggaagacaagaaggtactctaaatcctctaattat 244  Q
    ||  | |||||| |||  ||||| ||| | || ||||||||||||| ||||| |||| |||||    
T  33401436 tgtggtgtagcaacattaaacaactatggaaaaacaagaaggtactataaattctcttattat 33401374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 353 - 522
Target Start/End: Complemental strand, 33305155 - 33304986
Alignment:
Q  353 catgtcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagcgg 452  Q
    |||||| |||||||||| |||||||| | ||||||||||||| ||||||  | |  || ||||||| | | ||||||| ||||||||||||||||||  |    
T  33305155 catgtcccagtatctgcccaatttgaaacatttggatctaagacactccttagaactagtaaagatactagattttggggagttcccgaatcttgagaag 33305056  T
Q  453 ctagatctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    ||| || |||||||||||||||| |||||| || | |||||||||||| | ||||||| |||||||||||    
T  33305055 ctaaatttggaaggatgtataaaccttgtggagttggatccatctattggacttctaagaaagcttgttt 33304986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 69 - 197
Target Start/End: Original strand, 31561967 - 31562095
Alignment:
Q  69 ctcaggaagcctcaattgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaactt 168  Q
    ||||| |||||  ||||||||||| ||| |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||| ||  || |||||    
T  31561967 ctcagaaagcccgaattgtctttcgaacaaattaagatatgttgagtggcttgaatatcctttcaagtatttgccatcaagttttcacccctatgaactt 31562066  T
Q  169 gttgagttgatcttgaagagtagcagcat 197  Q
    || || |||||||||  ||| ||||||||    
T  31562067 gtagaattgatcttggcgagaagcagcat 31562095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 349 - 518
Target Start/End: Original strand, 31562220 - 31562389
Alignment:
Q  349 ttttcatgtcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttga 448  Q
    |||| |||||||||||||| | |||||| ||||| ||||||||||| ||||||| |||| |  |||||||   | ||||||||| |||||||||||||||    
T  31562220 tttttatgtcacagtatcttcccaatttaagaaaattggatctaagtcactccataaatcttgtaaagataatagattttggagcgttcccgaatcttga 31562319  T
Q  449 gcggctagatctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagctt 518  Q
    | |||||  | |||||| ||||||||| |||||| || | |||||||||||| | ||||||  |||||||    
T  31562320 gtggctaagtttggaagaatgtataaaccttgtggagttggatccatctattggacttctagaaaagctt 31562389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 522
Target Start/End: Complemental strand, 33263308 - 33263137
Alignment:
Q  351 ttcatgtcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagc 450  Q
    ||||||||||||||||||| |||||||||||  ||||||||||| |||||||   |  ||  ||||||   | |||||||||||||||| |||||||||     
T  33263308 ttcatgtcacagtatctgcccaatttgagaacattggatctaagtcactccatcgagctagaaaagataatagattttggagagttcccaaatcttgagt 33263209  T
Q  451 ggctagatctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    || || || |||||||||||| ||| |||||  || | |||||||||||| | ||||||| ||| |||||||    
T  33263208 ggttaaatttggaaggatgtacaaatcttgttgagttggatccatctattggacttctaagaaatcttgttt 33263137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 244
Target Start/End: Complemental strand, 33263566 - 33263391
Alignment:
Q  69 ctcaggaagcctcaattgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaactt 168  Q
    |||||||||||  | ||||||||| ||| |||| ||||||||||| |||  |||||||||||  ||||||||||||||||||||||| || ||| |||||    
T  33263566 ctcaggaagcccaagttgtctttcaaacaaattgagatatgttgagtgggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaactt 33263467  T
Q  169 gttgagttgatcttgaagagtagcagcatccaacaattatcggaagacaagaaggtactctaaatcctctaattat 244  Q
    || || |||||||||  ||  |||| |||   |||| ||| | || ||||||||||||| ||||| |||| |||||    
T  33263466 gtagaattgatcttggtgaaaagcaacattacacaactatggaaaaacaagaaggtactataaattctcttattat 33263391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 360 - 522
Target Start/End: Complemental strand, 33272468 - 33272306
Alignment:
Q  360 cagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagcggctagatc 459  Q
    |||||||| | |||||||||||  |||| ||||||  |||||| |||  || |||||||   | |||||||||||||||||||||||||| || || ||     
T  33272468 cagtatcttcccaatttgagaagattgggtctaagttactccagaaaactattaaagattgtagattttggagagttcccgaatcttgagtggttaaatt 33272369  T
Q  460 tggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    ||||||| |||| ||| |||||| || | |||||||||||| | ||||||| |||||||||||    
T  33272368 tggaagggtgtaaaaatcttgtggagttggatccatctattggacttctaagaaagcttgttt 33272306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 349 - 522
Target Start/End: Complemental strand, 33359393 - 33359222
Alignment:
Q  349 ttttcatgtcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttga 448  Q
    ||||||||||||||||||| | |||||||||||  |||||||||||  |||||||| |  ||  ||||||  || ||||||  |||||||||||||||||    
T  33359393 ttttcatgtcacagtatcttcccaatttgagaacattggatctaagtaactccaaagagctagaaaagataacagattttg--gagttcccgaatcttga 33359296  T
Q  449 gcggctagatctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
       |||| || || |||||||| ||||||||||| || | ||||||||| || | ||||||| |||||||||||    
T  33359295 aaagctaaatttgaaaggatgtgtaaaacttgtggagttggatccatctcttggacttctaaaaaagcttgttt 33359222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 33286457 - 33286350
Alignment:
Q  86 gtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttgagttgatcttgaa 185  Q
    ||||||| ||| |||||||||||||| | |||| || |||||||||||| ||||||||||||| |||||| || ||| ||||||| || ||||||||| |    
T  33286457 gtctttcaaacaaattaagatatgttcagtggactggatatcctttcaaatatttgccatcaaattttcaccccaatgaacttgtagaattgatcttgca 33286358  T
Q  186 gagtagca 193  Q
     |||||||    
T  33286357 tagtagca 33286350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 89 - 244
Target Start/End: Complemental strand, 33305392 - 33305237
Alignment:
Q  89 tttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttgagttgatcttgaagag 188  Q
    |||| ||| |||||| ||||||||| |||  |||||||||||| |||||||||||||||| |||||| || ||| ||||||| || |||||||| |||||    
T  33305392 tttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagag 33305293  T
Q  189 tagcagcatccaacaattatcggaagacaagaaggtactctaaatcctctaattat 244  Q
     ||||  ||  ||||| ||| |  | ||||||||||||| ||||| |||| |||||    
T  33305292 cagcaaaattgaacaactatggacaaacaagaaggtactataaattctcttattat 33305237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 424 - 522
Target Start/End: Complemental strand, 9167373 - 9167275
Alignment:
Q  424 attttggagagttcccgaatcttgagcggctagatctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    ||||||||| ||| |||||||||||| || ||||| ||||||||||| ||||||||||| || | ||||||||| || | ||||||| |||||||||||    
T  9167373 attttggagggtttccgaatcttgagtggttagatttggaaggatgtgtaaaacttgtggagttggatccatctcttggacttctaagaaagcttgttt 9167275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 360 - 522
Target Start/End: Complemental strand, 33388734 - 33388572
Alignment:
Q  360 cagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagcggctagatc 459  Q
    |||||||| | |||||||||||  ||||||||||| ||||||| |||| ||  ||||||   | |||||||||||||||||||||||||| || || ||     
T  33388734 cagtatcttcccaatttgagaagattggatctaagacactccagaaatctagaaaagatagtagattttggagagttcccgaatcttgagtggttaaatt 33388635  T
Q  460 tggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    |||||  ||||   || |||||  || |||||||||||||| | ||||||| |||||||||||    
T  33388634 tggaattatgtgcgaaccttgttgagttagatccatctattggacttctaagaaagcttgttt 33388572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 33388953 - 33388855
Alignment:
Q  86 gtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttgagttgatcttga 184  Q
    ||||||| |||  ||||||||||||||| |||| | | |||||||||||||||||||||||||||||||| || | | | ||||| |||||||||||||    
T  33388953 gtctttcaaacacattaagatatgttgagtggaattattatcctttcaagtatttgccatcaagttttcaccccagtgatcttgtagagttgatcttga 33388855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 33643778 - 33643881
Alignment:
Q  84 ttgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttgagttgatcttg 183  Q
    ||||||||| || ||||||||||||||||| |||  |   |||||||||| || ||||||||||| ||||||||| ||||||||||| || ||| |||||    
T  33643778 ttgtctttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttg 33643877  T
Q  184 aaga 187  Q
    ||||    
T  33643878 aaga 33643881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 352 - 522
Target Start/End: Complemental strand, 33399699 - 33399529
Alignment:
Q  352 tcatgtcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagcg 451  Q
    |||||||||||||||| ||||||||| |||| ||||||||||     || | |||| ||  ||||||   | |||||||||||||||| ||||||||| |    
T  33399699 tcatgtcacagtatcttcgcaatttgcgaaaattggatctaatgggttcaataaatctagaaaagataatagattttggagagttcccaaatcttgagtg 33399600  T
Q  452 gctagatctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    | ||||| |||||  |||||  || |||||  || | |||||||||||| | ||||||| |||||||||||    
T  33399599 gttagatttggaattatgtaagaaccttgttgagttggatccatctattggacttctaagaaagcttgttt 33399529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 139 - 233
Target Start/End: Complemental strand, 33410798 - 33410704
Alignment:
Q  139 ttgccatcaagttttcagccaaatcaacttgttgagttgatcttgaagagtagcagcatccaacaattatcggaagacaagaaggtactctaaat 233  Q
    ||||||| ||||||||| || ||| |||||||||| ||||||||||||| ||||||| || ||||| ||| | ||  |||||||||||| |||||    
T  33410798 ttgccattaagttttcaccctaatgaacttgttgaattgatcttgaagaatagcagcttcaaacaactatggaaaagcaagaaggtactataaat 33410704  T

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Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 9167678 - 9167609
Alignment:
Q  86 gtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttca 155  Q
    ||||||| ||||||||||||||| |||| |||  |  |||||||||||||||||||||||| ||||||||    
T  9167678 gtctttcgaacgaattaagatatcttgagtggtatcgatatcctttcaagtatttgccatcgagttttca 9167609  T

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Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 522
Target Start/End: Complemental strand, 33286221 - 33286048
Alignment:
Q  349 ttttcatgtcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttga 448  Q
    ||||||| | ||||||||| | |||||||||    ||||||||| |  ||||||||||  || |||||||   | |||| ||||||||||||||||||||    
T  33286221 ttttcatattacagtatcttcccaatttgaggggattggatctacgatactccaaaaaactagtaaagatagtagatttcggagagttcccgaatcttga 33286122  T
Q  449 gcggctagatctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    | || || || ||||||||||||| |  ||| || || | |||||||||||| | ||||||| ||| |||||||    
T  33286121 gtggttaaatttggaaggatgtatcagccttttggagttggatccatctattggacttctaagaaaccttgttt 33286048  T

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Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 233
Target Start/End: Complemental strand, 33058476 - 33058328
Alignment:
Q  85 tgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttgagttgatcttga 184  Q
    |||||||| ||| ||||||||| |||| | |||  |  |||||||| ||||||||||||||||| |||||| || ||| ||||||| || ||||||||||    
T  33058476 tgtctttcgaacaaattaagatttgttcactggtttagatatccttccaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttga 33058377  T
Q  185 agagtagcagcatccaacaattatcggaagacaagaaggtactctaaat 233  Q
     |   |||| |||  ||||| ||| | || ||||||||||||| |||||    
T  33058376 cggagagcaacattaaacaactatggaaaaacaagaaggtactataaat 33058328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 522
Target Start/End: Complemental strand, 33410636 - 33410465
Alignment:
Q  348 cttttcatgtcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttg 447  Q
    |||||||||||||||||| | | |||||||| |   |||||||||||  |||||||||   ||  ||||||   | ||||||||||||||||||||||||    
T  33410636 cttttcatgtcacagtattttcccaatttgaaagcattggatctaagtgactccaaaa---tagaaaagataatagattttggagagttcccgaatcttg 33410540  T
Q  448 agcggctagatctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    ||  | || || ||||| |||||  |||||||||| || | ||| |||| ||| | ||||||| |||||||||||    
T  33410539 agtcgttaaatttggaaagatgtgaaaaacttgtggagttggattcatcgattggacttctaagaaagcttgttt 33410465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 522
Target Start/End: Original strand, 33644074 - 33644172
Alignment:
Q  424 attttggagagttcccgaatcttgagcggctagatctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    |||||||||||||||||||||||||| || || || ||||||||||  |||| |||||| || | |||  ||||||| | ||| ||| |||||||||||    
T  33644074 attttggagagttcccgaatcttgagtggttaaatttggaaggatgcgtaaaccttgtggagttggatttatctattggacttttaagaaagcttgttt 33644172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 123 - 244
Target Start/End: Complemental strand, 33359590 - 33359469
Alignment:
Q  123 atatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttgagttgatcttgaagagtagcagcatccaacaattatcggaagacaagaag 222  Q
    |||||||| | ||||||||||| |||||||| |  | ||| ||||||| || |||||||||||||  ||||||||  ||||| ||| | || ||||||||    
T  33359590 atatccttgccagtatttgccaacaagttttaactccaatgaacttgtagaattgatcttgaagaaaagcagcattaaacaactatggaaaaacaagaag 33359491  T
Q  223 gtactctaaatcctctaattat 244  Q
    ||| | ||||| |||| |||||    
T  33359490 gtaatataaattctcttattat 33359469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 226
Target Start/End: Complemental strand, 33272698 - 33272571
Alignment:
Q  99 attaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttgagttgatcttgaagagtagcagcatc 198  Q
    ||||||||||||||| |||  || |||||||||||||| | | ||| |||||||||| || ||| | ||| | || |||||||||| || ||||  ||||    
T  33272698 attaagatatgttgagtgggatggatatcctttcaagtgtctaccaacaagttttcaccccaatgaccttatagaattgatcttgatgaatagcgacatc 33272599  T
Q  199 caacaattatcggaagacaagaaggtac 226  Q
     ||||| ||| | || ||||||||||||    
T  33272598 aaacaactatggaaaaacaagaaggtac 33272571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 13610357 - 13610415
Alignment:
Q  122 aatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttgagttgatc 180  Q
    ||||||||||||  | |||||||||||||||||||||  || |||||||||| ||||||    
T  13610357 aatatcctttcacatgtttgccatcaagttttcagccggataaacttgttgaattgatc 13610415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 520
Target Start/End: Original strand, 28869610 - 28869768
Alignment:
Q  362 gtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttgagcggctagatctg 461  Q
    |||||| | |||||||||||  ||| ||||||| |||||||  ||| ||  ||||||   | |||||||||||||||| |||||||||  |||| |  ||    
T  28869610 gtatcttcccaatttgagaacattgcatctaagtcactccagcaatctagaaaagataatagattttggagagttcccaaatcttgagaagctaaagttg 28869709  T
Q  462 gaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgt 520  Q
     |||  |||||||| |||||  || | |||||||||||| | ||||||| |||||||||    
T  28869710 aaagagtgtataaaccttgttgagttggatccatctattggacttctaagaaagcttgt 28869768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 464 - 522
Target Start/End: Complemental strand, 33399515 - 33399457
Alignment:
Q  464 aggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    |||||||| |||||||||| || | |||||||||||| | ||||||| |||||||||||    
T  33399515 aggatgtaaaaaacttgtggagttggatccatctattggacttctaagaaagcttgttt 33399457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 518
Target Start/End: Original strand, 13614410 - 13614490
Alignment:
Q  438 ccgaatcttgagcggctagatctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagctt 518  Q
    ||||||||||||   ||| |||| | ||||||||||||||| |||||||| |||||||| ||| || |  |||||||||||    
T  13614410 ccgaatcttgagtccctaaatcttgcaggatgtataaaactggtgcagattgatccatccattggtatcttaacaaagctt 13614490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 349 - 522
Target Start/End: Complemental strand, 1328 - 1155
Alignment:
Q  349 ttttcatgtcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttga 448  Q
    |||||||||||||| |||| | |||||||||||  |||||||||||  ||||||| ||  ||  ||||||   | |||||||| |||| || ||||||||    
T  1328 ttttcatgtcacagcatcttcccaatttgagaagattggatctaagtgactccaagaagctagaaaagatagaagattttggacagtttcctaatcttga 1229  T
Q  449 gcggctagatctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    | || || || ||||| ||||||||||||||||| || | |||||||||||| | ||||||| |||||||||||    
T  1228 gtggttaaatttggaaagatgtataaaacttgtggagttggatccatctattggacttctaagaaagcttgttt 1155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 1528 - 1388
Alignment:
Q  98 aattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttgagttgatcttgaagagtagcagcat 197  Q
    ||||| |||||||| |||||| || |||||||||||||||| |||||||||||||||| ||   | ||||||| || ||||| |||  ||| ||| ||||    
T  1528 aattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagctgcat 1429  T
Q  198 ccaacaattatcggaagacaagaaggtactctaaatcctct 238  Q
      ||||| ||| | || ||||||||||||| ||||| ||||    
T  1428 taaacaactatggaaaaacaagaaggtactataaattctct 1388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 349 - 522
Target Start/End: Complemental strand, 7074 - 6901
Alignment:
Q  349 ttttcatgtcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttga 448  Q
    |||||||||||||| |||| | |||||||||||  |||||||||||  ||||||| ||  ||  ||||||   | |||||||| |||| || ||||||||    
T  7074 ttttcatgtcacagcatcttcccaatttgagaagattggatctaagtgactccaagaagctagaaaagatagaagattttggacagtttcctaatcttga 6975  T
Q  449 gcggctagatctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    | || || || ||||| ||||||||||||||||| || | |||||||||||| | ||||||| |||||||||||    
T  6974 gtggttaaatttggaaagatgtataaaacttgtggagttggatccatctattggacttctaagaaagcttgttt 6901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 7274 - 7134
Alignment:
Q  98 aattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttcagccaaatcaacttgttgagttgatcttgaagagtagcagcat 197  Q
    ||||| |||||||| |||||| || |||||||||||||||| |||||||||||||||| ||   | ||||||| || ||||| |||  ||| ||| ||||    
T  7274 aattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaagctgcat 7175  T
Q  198 ccaacaattatcggaagacaagaaggtactctaaatcctct 238  Q
      ||||| ||| | || ||||||||||||| ||||| ||||    
T  7174 taaacaactatggaaaaacaagaaggtactataaattctct 7134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 17439996 - 17440067
Alignment:
Q  84 ttgtctttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccatcaagttttca 155  Q
    ||||||||| ||| |||||||||||||||| |||  | ||||||||||||||||||||||| ||||||||||    
T  17439996 ttgtctttcgaacaaattaagatatgttgagtggcctaaatatcctttcaagtatttgccaacaagttttca 17440067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 349 - 522
Target Start/End: Original strand, 17440228 - 17440401
Alignment:
Q  349 ttttcatgtcacagtatctgcgcaatttgagaaatttggatctaagccactccaaaaatttaataaagatgccacattttggagagttcccgaatcttga 448  Q
    |||| |||||||||||||| | |||||||||||  |||||||||||  |||| | |||  ||  ||||||     |||||||||||||||| ||||||||    
T  17440228 tttttatgtcacagtatcttcccaatttgagaagattggatctaagtgactctagaaagctagaaaagataatggattttggagagttcccaaatcttga 17440327  T
Q  449 gcggctagatctggaaggatgtataaaacttgtgcagatagatccatctatttgtcttctaacaaagcttgttt 522  Q
    | || || || |||||||||||  || ||||||| |  | |||||||| ||| | ||||||| |||||||||||    
T  17440328 gtggttaaatttggaaggatgtgaaagacttgtggaattggatccatcaattggacttctaagaaagcttgttt 17440401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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