View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16696_low_6 (Length: 435)
Name: NF16696_low_6
Description: NF16696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16696_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 7e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 24400950 - 24401124
Alignment:
| Q |
18 |
agatgaagtttttggcccattacttccaattattactgtaagtttcattgcataaaatagcctctagacttaccacgtgatttttaaatgacgacactag |
117 |
Q |
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| T |
24400950 |
agatgaagtttttggcccattacttccaattattactgtaagtttcattgcataaaatagcctctagacttaccacatgatttttaaatgacgacactag |
24401049 |
T |
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| Q |
118 |
ttactattttacaaatgtctggtacgaatcttgacgttacaaaatcaaactcttacgacttagttttgccacatg |
192 |
Q |
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| T |
24401050 |
tgactattttacaaatgtctggtacgaatcttgacgttacaaaatcaaactcttacgacttagttttaccacatg |
24401124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 253 - 421
Target Start/End: Original strand, 24401185 - 24401353
Alignment:
| Q |
253 |
gcataatttgcaggtggataagattgaggacagtattgagttcataagctctaggcctaagcctcttgccctctatgttttcaccaaaaacaaaacactg |
352 |
Q |
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| T |
24401185 |
gcataatttgcaggtggataagattgaggacagtattgaattcataagctctaggcctaagcctcttgccctttatgttttcaccaaaaacaaaacactg |
24401284 |
T |
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| Q |
353 |
cagaacagaatgatatctgaaacatcatcaggcagtgttactttcaatgatgcaattctgcaagtatta |
421 |
Q |
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| T |
24401285 |
cagaacagaatgatatctgaaacatcatcaggcagtgttactttcaatgatgcaattctgcaagtatta |
24401353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 258 - 381
Target Start/End: Original strand, 41845585 - 41845708
Alignment:
| Q |
258 |
atttgcaggtggataagattgaggacagtattgagttcataagctctaggcctaagcctcttgccctctatgttttcaccaaaaacaaaacactgcagaa |
357 |
Q |
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| T |
41845585 |
atttgcaggtggagaagattgaagacggtattgagttcataaactcaaagcctaaacctctagcaatttatgccttcacaaagaacaatacactgcagag |
41845684 |
T |
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| Q |
358 |
cagaatgatatctgaaacatcatc |
381 |
Q |
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| T |
41845685 |
aagattggtatctgaaacatcatc |
41845708 |
T |
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