View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16697_high_14 (Length: 401)
Name: NF16697_high_14
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_high_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 386
Target Start/End: Original strand, 14983246 - 14983631
Alignment:
| Q |
12 |
atgaacaccattttactaaatcgtatcattcttatagcaactaacaaatcaaataaaaatatgagtcaaataattatttagagtttggtcagtaaaagag |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14983246 |
atgaagaccattttactaaatcgtatcattcttatagcaactaacaaatcaaataaaaatatgagtcaaataattatttagagtttggtcattaaaagag |
14983345 |
T |
|
| Q |
112 |
ttgcaatattgtgggtaacatctttgtagatttagacagttggatttgtttaannnnnnnnattattcaatctaaccacacttctctccaacaatcattt |
211 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14983346 |
ttgcaatattgtaggtaacatctttgtagaattagacagttggatttgtttaattttttgtattattcaatctaaccacacttctctgcaacaatcattt |
14983445 |
T |
|
| Q |
212 |
ttatgtacatcatttgtgttatgagttggtcttcatttttcttcttctattgat-----------tatttcgaacatgttcccttcactttctatgcatt |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |
|
|
| T |
14983446 |
ttatgtacatcatttatgttatgagttggacttcatttttcttcttctattgattatttccaacatatttccaacatgttcccttcactttcaatgcatt |
14983545 |
T |
|
| Q |
301 |
tttcttatttggttcaaacatttctgaacaaaaggttgtaaatggaagccaacttggctagccatataagaatgggatacaaatat |
386 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14983546 |
tttcttatttggttcaaacattgctgaacaaaaggttgtaaatggaagccaacttggctagccatataagaatgggatacaaatat |
14983631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 18783823 - 18783884
Alignment:
| Q |
209 |
tttttatgtacatcatttgtgttatgagttggtcttcatttttcttcttctattgattattt |
270 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||| |||||||||||||||||| |||||| |
|
|
| T |
18783823 |
tttttatgtacatcatttgtgctatgggttggtcttaatttttcttcttctattgtttattt |
18783884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 18506929 - 18506865
Alignment:
| Q |
12 |
atgaacaccattttactaaatcgtatcattcttatagcaactaacaaatcaaataaaaatatgag |
76 |
Q |
| |
|
||||||||||||||||| |||| |||||||| |||| || ||| ||||||||| ||||||||||| |
|
|
| T |
18506929 |
atgaacaccattttacttaatcatatcattcatataacagctagcaaatcaaacaaaaatatgag |
18506865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University