View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_high_18 (Length: 359)
Name: NF16697_high_18
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 47056009 - 47055661
Alignment:
| Q |
1 |
atctcaattgccatcattgttcatgtcagctcagcatgcaaagcattaccattgccaattttgattacaagtataaatattttctatgagatttgtgcaa |
100 |
Q |
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| T |
47056009 |
atctcaattgccatcattgttcatgtcagctcagcatgcaaagcattgccattgccaattttgattacaagtataaatatttttgatgagatttgtgcaa |
47055910 |
T |
|
| Q |
101 |
tattgccgcaatccataatgaccgaaatcgtgatgaaatccttaacgcgcctcgaccgatatttaaacgttgcaaaaaattctcnnnnnnntcccgataa |
200 |
Q |
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| T |
47055909 |
tattgccgatatccataatgaccaaaatcgtgatgaaatccttaacgcgcctcgaccgatatttaaacgtcgcaaaaaattctaaaaaaaatcccgataa |
47055810 |
T |
|
| Q |
201 |
aaggaataagggtgcaccgtcttaccaaagaacaagtgaatcctttcatattaacagcgtgtgttgtttacatgtttggccaacacttcatgaattcggt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47055809 |
aaggaataagggtgcaccgtcttaccaaagaacaagtgaatcctttcatattaacagcgtgtgttgtttacatgtttggccaacacttcatgaattcgga |
47055710 |
T |
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| Q |
301 |
gatagatagcaaatgaatttgtgaaactctctgaacttgaatgcctatg |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47055709 |
gatagatagcaaatgaatttgtgaaactctctgaacttgaatgcctatg |
47055661 |
T |
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