View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_high_21 (Length: 304)
Name: NF16697_high_21
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 44379484 - 44379761
Alignment:
| Q |
11 |
cagagacccaattacaaaaatacttgacaagtgaaacagtttttcctgattatttgtaaaatcaaatggaagaacttagatggaaaattccaagaataca |
110 |
Q |
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| T |
44379484 |
cagagacccaattacaaaaatacttgacaagtgaaacagtttttcctgattatttgtaaaatcaaatggaagaacttagatggaaaattccaagaataca |
44379583 |
T |
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| Q |
111 |
tcaacaaaagggtgnnnnnnntaaactagtacacctgttgcagctcagatagaaaacaaattcagagaaataatcacatattttaaaggctatgattcaa |
210 |
Q |
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| T |
44379584 |
tcaacaaaagggtgaaaaaaataaactagtacacctgttgcagctcagatagaaaacaaattcagagaaataatcacatattttaaaggctatgattcaa |
44379683 |
T |
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| Q |
211 |
gctacaaattcttcacagcaattaagagagcaagtattaaacaagaaacaagtttgagataaagaaaatggaattaca |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44379684 |
gctacaaattcttcacagcaattaagagagcaagtattaaacaagaaacaagtttgagataaagaaaatggaattaca |
44379761 |
T |
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