View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16697_high_22 (Length: 303)

Name: NF16697_high_22
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16697_high_22
NF16697_high_22
[»] chr8 (2 HSPs)
chr8 (12-281)||(565562-565833)
chr8 (275-303)||(6161941-6161969)
[»] scaffold0039 (1 HSPs)
scaffold0039 (74-119)||(111690-111735)
[»] chr1 (2 HSPs)
chr1 (74-116)||(32920812-32920854)
chr1 (74-115)||(30850170-30850211)
[»] chr7 (1 HSPs)
chr7 (74-115)||(43291271-43291312)
[»] chr2 (2 HSPs)
chr2 (81-115)||(11158236-11158270)
chr2 (74-115)||(18834598-18834639)
[»] chr6 (2 HSPs)
chr6 (74-115)||(5934208-5934249)
chr6 (74-110)||(33350982-33351018)
[»] chr3 (2 HSPs)
chr3 (74-115)||(445295-445336)
chr3 (74-115)||(17650574-17650615)
[»] chr5 (1 HSPs)
chr5 (83-115)||(3071174-3071206)


Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 565833 - 565562
Alignment:
Q  12 agtaaaaataggtatgattcgatgcgtaaattatgagtaccgtatgcgtactcggtacg--tgtgtaccgatacttctccatgtttggagtacccatgct 109  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  565833 agtaaaaataggtatgattcgatgcgtaaattatgaataccgtatgggtactcggtacgggtgtgtaccgatacttctccatgtttgaagtacccatgct 565734  T
Q  110 taagagatattgggcttaatcgacccaattcatgaattaatggttaagatattttaattagcattttgatatgttagctgttatttaaaatattttgaag 209  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  565733 taagagatattgggcttaattgacccaattcatgaattaatggttaagatattttaattagcattttgatatgttagctgttattttaaatattttgaag 565634  T
Q  210 taattaagacttcttgttagatcacttgcatttatttgaaaacaaaagtttgaaattacacctttaaatgta 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  565633 taattaagacttcttgttagatcacttgcatttatttgaaaacaaaagtttgaaattacacctttaaatgta 565562  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 303
Target Start/End: Original strand, 6161941 - 6161969
Alignment:
Q  275 aaatgtagagaaatgatatttgtacaacc 303  Q
    |||||||||||||||||||||||||||||    
T  6161941 aaatgtagagaaatgatatttgtacaacc 6161969  T

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Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 111690 - 111735
Alignment:
Q  74 gtaccgatacttctccatgtttggagtacccatgcttaagagatat 119  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||    
T  111690 gtaccggtacttctccatgtttggagtacccatgcttgagagatat 111735  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 32920812 - 32920854
Alignment:
Q  74 gtaccgatacttctccatgtttggagtacccatgcttaagaga 116  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  32920812 gtaccggtacttctccatgtttggagtacccatgcttcagaga 32920854  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 30850170 - 30850211
Alignment:
Q  74 gtaccgatacttctccatgtttggagtacccatgcttaagag 115  Q
    |||||| |||||||||||||||||||||||||||||| ||||    
T  30850170 gtaccggtacttctccatgtttggagtacccatgcttcagag 30850211  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 43291271 - 43291312
Alignment:
Q  74 gtaccgatacttctccatgtttggagtacccatgcttaagag 115  Q
    |||||| |||||||||||||||||||||||||||||| ||||    
T  43291271 gtaccggtacttctccatgtttggagtacccatgcttcagag 43291312  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 115
Target Start/End: Complemental strand, 11158270 - 11158236
Alignment:
Q  81 tacttctccatgtttggagtacccatgcttaagag 115  Q
    |||||||||||||||||||||||||||||| ||||    
T  11158270 tacttctccatgtttggagtacccatgcttcagag 11158236  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 18834639 - 18834598
Alignment:
Q  74 gtaccgatacttctccatgtttggagtacccatgcttaagag 115  Q
    |||||| ||||||||||||||||||||| |||||||| ||||    
T  18834639 gtaccggtacttctccatgtttggagtatccatgcttgagag 18834598  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 5934208 - 5934249
Alignment:
Q  74 gtaccgatacttctccatgtttggagtacccatgcttaagag 115  Q
    |||||| |||| ||||||||||||||||||||||||| ||||    
T  5934208 gtaccggtactcctccatgtttggagtacccatgcttcagag 5934249  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 110
Target Start/End: Original strand, 33350982 - 33351018
Alignment:
Q  74 gtaccgatacttctccatgtttggagtacccatgctt 110  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  33350982 gtaccaatacttcttcatgtttggagtacccatgctt 33351018  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 445336 - 445295
Alignment:
Q  74 gtaccgatacttctccatgtttggagtacccatgcttaagag 115  Q
    |||||| |||||||||||||||| ||||||||||||| ||||    
T  445336 gtaccggtacttctccatgtttgaagtacccatgcttcagag 445295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 17650615 - 17650574
Alignment:
Q  74 gtaccgatacttctccatgtttggagtacccatgcttaagag 115  Q
    |||||||||||| ||||||| |||||||||||||||| ||||    
T  17650615 gtaccgatacttttccatgtctggagtacccatgcttcagag 17650574  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 3071174 - 3071206
Alignment:
Q  83 cttctccatgtttggagtacccatgcttaagag 115  Q
    |||||||||||||||||||||||||||| ||||    
T  3071174 cttctccatgtttggagtacccatgctttagag 3071206  T

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