View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_high_24 (Length: 286)
Name: NF16697_high_24
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 22 - 275
Target Start/End: Original strand, 23789981 - 23790234
Alignment:
| Q |
22 |
ttaatctattttgaagcagcaagactttctaaacgagctttgtagaaagccaaataagtttctttgggagggagtttttccttgacaattgggtggttat |
121 |
Q |
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| T |
23789981 |
ttaatctattttgaagcagcaagactttctaaacgagctttgtagaaagccaaataagtttctttgggagggagtttttccttgacaattgggtggttat |
23790080 |
T |
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| Q |
122 |
tgaagttttggctccaattgaatagtttgggaaatttctcactagtgaacaacttcaatcccattagttcttgtaaagctatgaaagctgcagtaatgtc |
221 |
Q |
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| T |
23790081 |
tgaagttttggctccaattgaatagtttgggaaatttctcactagtgaacaacttcaatcccattacttcttgtaaagctatgaaggctgcagtaatgtc |
23790180 |
T |
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| Q |
222 |
aacaatgccaatctcatctccaccaaagaattttcctttgagctcattctctag |
275 |
Q |
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| T |
23790181 |
aacaatgccaatctcatctccaccaaagaatttgtccttgagctcattctctag |
23790234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 23820906 - 23821083
Alignment:
| Q |
19 |
aaattaatctattttgaagcagcaagactttctaaacgagctttgtagaaagccaaataagtttctttgggagggagtttttccttgacaattgggtggt |
118 |
Q |
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| T |
23820906 |
aaattaatctattttgaagcaacaagactttcataacgagctttgaagaaggccaaaagtccttctctacgaggcaagttttccttgacaattgggtggt |
23821005 |
T |
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| Q |
119 |
tattgaagttttggctccaattgaatagtttgggaaatttctcactagtgaacaacttcaatcccattagttcttgta |
196 |
Q |
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| T |
23821006 |
tgttgaagtcttgactccaattgtaaagcttaggaaatttctcacttgtgaacaacttcaatcctgttacttcttgta |
23821083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 98 - 194
Target Start/End: Original strand, 23796682 - 23796778
Alignment:
| Q |
98 |
tttccttgacaattgggtggttattgaagttttggctccaattgaatagtttgggaaatttctcactagtgaacaacttcaatcccattagttcttg |
194 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||||| ||| || |||||||||||||||||||||||||| | ||| |||| |||||| |
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| T |
23796682 |
tttccttgacaatagggtggttattgaagtcttggctccaattgtataactttggaaatttctcactagtgaacaacttgagtcctattacttcttg |
23796778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 23815453 - 23815615
Alignment:
| Q |
16 |
cttaaattaatctattttgaagcagcaagactttctaaacgagctttgtagaaagccaaataagtttctttgggagggagtttttccttgacaattgggt |
115 |
Q |
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| T |
23815453 |
cttaaattgatctattttgaaccaaaatgactttcataacgagctttgtagaaggccaaaagggtctctctaggaggcagtttttccttgacaattgggt |
23815552 |
T |
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| Q |
116 |
ggttattgaagttttggctccaattgaatagtttgggaaatttctcactagtgaacaacttca |
178 |
Q |
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| T |
23815553 |
gattgttgaattcttggctccaattgtaaagctttggaaattcttcacttgtgaacaatttca |
23815615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 23800857 - 23800982
Alignment:
| Q |
53 |
aacgagctttgtagaaagccaaataagtttctttgggagggagtttttccttgacaattgggtggttattgaagttttggctccaattgaatagtttggg |
152 |
Q |
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||||| ||||||||||||||||| || ||| | ||||| | ||||||||| ||||||||||| || ||||| | ||||||||||||| | || || || |
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| T |
23800857 |
aacgacctttgtagaaagccaaaagggtctctctaggaggcaatttttccttaacaattgggtgattgttgaattcttggctccaattgtaaagctttgg |
23800956 |
T |
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| Q |
153 |
aaatttctcactagtgaacaacttca |
178 |
Q |
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||||| |||| |||||||||| |||| |
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| T |
23800957 |
aaattcctcaatagtgaacaatttca |
23800982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 23827135 - 23827291
Alignment:
| Q |
23 |
taatctattttgaagcagcaagactttctaaacgagctttgtagaaagccaaataagtttctttgggagggagtttttccttgacaattgggtggttatt |
122 |
Q |
| |
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||||||||||||||||| ||||||||| |||||||||| || ||| |||| |||| | ||||| | ||| ||||| |||||||| ||||| | |
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| T |
23827135 |
taatctattttgaagcaagaagactttcataacgagctttaaagtaagtcaaaagtccttctctaggaggcaatttatccttaacaattggatggttggt |
23827234 |
T |
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| Q |
123 |
gaagttttggctccaattgaatagtttgggaaatttctcactagtgaacaacttcaa |
179 |
Q |
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| T |
23827235 |
gaagtcttgactccatttgtaaagcttgggaaatttctcactagtgaacaaattcaa |
23827291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 23815668 - 23815724
Alignment:
| Q |
216 |
aatgtcaacaatgccaatctcatctccaccaaagaattttcctttgagctcattctc |
272 |
Q |
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||||||||||| ||||||||| || |||||||||||||| |||||||||||||||| |
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| T |
23815668 |
aatgtcaacaaagccaatctcctccccaccaaagaatttgtctttgagctcattctc |
23815724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 23827323 - 23827378
Alignment:
| Q |
196 |
aaagctatgaaagctgcagtaatgtcaacaatgccaatctcatctccaccaaagaa |
251 |
Q |
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| T |
23827323 |
aaagctatgaaaactgcagcaatatcaacaattccaatctcttctccaccaaagaa |
23827378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 178
Target Start/End: Original strand, 23805662 - 23805744
Alignment:
| Q |
96 |
tttttccttgacaattgggtggttattgaagttttggctccaattgaatagtttgggaaatttctcactagtgaacaacttca |
178 |
Q |
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| T |
23805662 |
tttttcattaacaattggatggttgttgaattcttggctccaattataaagcttgggaaattcctcactagtgaacaatttca |
23805744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 23805792 - 23805853
Alignment:
| Q |
211 |
gcagtaatgtcaacaatgccaatctcatctccaccaaagaattttcctttgagctcattctc |
272 |
Q |
| |
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|||| ||||||||||| ||||| || ||||||||||||||||| |||||||||||||||| |
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| T |
23805792 |
gcagcaatgtcaacaaaaccaatatcctctccaccaaagaatttgtctttgagctcattctc |
23805853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 23821098 - 23821174
Alignment:
| Q |
196 |
aaagctatgaaagctgcagtaatgtcaacaatgccaatctcatctccaccaaagaattttcctttgagctcattctc |
272 |
Q |
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| T |
23821098 |
aaagctatgaagaccgcagtaatgtcaataagtccaatatcatctccaccaaagaacttgtccttgagctcattctc |
23821174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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