View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_high_30 (Length: 260)
Name: NF16697_high_30
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 37162835 - 37162593
Alignment:
| Q |
1 |
caaggtgctgcaaatgagacagatttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162835 |
caaggtgctgcaaatgagacagatttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgaga |
37162736 |
T |
|
| Q |
101 |
aagatcatttggaattcttcctccataaaatgaactttggaggtcaagtaatctcaagttgcttaaagaaccaaataattctgggaaatcattgtttgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162735 |
aagatcatttggaattcttcctccataaaatgaactttggaggtcaaggaatctcaagttgcttaaagaaccaaataattctgggaaatcattgtttgaa |
37162636 |
T |
|
| Q |
201 |
aacgtactccatccgaggttcaaatactttaaatgtcgcaact |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37162635 |
aacgtactccatccgaggttcaaatactttaaatgtcgcaact |
37162593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 38745860 - 38745618
Alignment:
| Q |
1 |
caaggtgctgcaaatgagacagatttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgaga |
100 |
Q |
| |
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|||||| |||||||||||| ||||||||||||| |||||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||| |
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| T |
38745860 |
caaggtactgcaaatgagagagatttccaagttaatgagggattgtaccctcaaggccattgtctgaaagatcaagatattgcaagtgcgaaagacgagc |
38745761 |
T |
|
| Q |
101 |
aagatcatttggaattcttcctccataaaatgaactttggaggtcaagtaatctcaagttgcttaaagaaccaaataattctgggaaatcattgtttgaa |
200 |
Q |
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|||||| |||||||||||||| |||| |||||||| |||||||||||| ||||||||||| |||| | ||||||||||||||||||||| | |||||||| |
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| T |
38745760 |
aagatcctttggaattcttcccccatcaaatgaaccttggaggtcaagaaatctcaagtttcttagaaaaccaaataattctgggaaataactgtttgaa |
38745661 |
T |
|
| Q |
201 |
aacgtactccatccgaggttcaaatactttaaatgtcgcaact |
243 |
Q |
| |
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| T |
38745660 |
aacagattccaactgaggttcaaatactttaaatgccgcaact |
38745618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 37130095 - 37129897
Alignment:
| Q |
1 |
caaggtgctgcaaatgagacagatttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgaga |
100 |
Q |
| |
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|||| |||||||||||||| |||||||||| |||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| ||||||| | |
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| T |
37130095 |
caagatgctgcaaatgagagagatttccaaattgatgagggattgtacccttgaggccattccatgaaagatcaagatattgcaagtgcaaaagacgtgc |
37129996 |
T |
|
| Q |
101 |
aagatcatttggaattcttcctccataaaatgaactttggaggtcaagtaatctcaagttgcttaaagaaccaaataattctgggaaatcattgtttga |
199 |
Q |
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||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||| || |||||| |
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| T |
37129995 |
aagatcatttggaattcttccgccacgaaatgaactttggaggtcaaggaatctcaagtttcttagtgaaccaaataattctggaaaattatcgtttga |
37129897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 37137251 - 37137017
Alignment:
| Q |
1 |
caaggtgctgcaaatgagacagatttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgaga |
100 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||||| || |||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||| |
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| T |
37137251 |
caagatgctgcaaatgagagagatttccgagttgaggacggattgtaccctcgaggccattccttgaaagatcaagatattgcaagtgcgacagatgagc |
37137152 |
T |
|
| Q |
101 |
aagatcatttggaattcttcctccataaaatgaactttggaggtcaagtaatctcaagttgcttaaagaaccaaataattctgggaaatcattgtttgaa |
200 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||| || ||||||||| |||||||||||||||| |||||||||||||||||| | |||| |||||| |
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| T |
37137151 |
aagatcatttggaattcttccgccagagtatgaagctttgaggtcaaggaatctcaagttgcttagagaaccaaataattctggaatatcactgtttgtt |
37137052 |
T |
|
| Q |
201 |
aacgtactccatccgaggttcaaatactttaaatg |
235 |
Q |
| |
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||| | |||| ||||||||||||||||||||| |
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| T |
37137051 |
aacagattccaagagaggttcaaatactttaaatg |
37137017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 199
Target Start/End: Complemental strand, 37144328 - 37144195
Alignment:
| Q |
66 |
gaaagatcaagatattgcaagtgcgaaagacgagaaagatcatttggaattcttcctccataaaatgaactttggaggtcaagtaatctcaagttgctta |
165 |
Q |
| |
|
|||| |||||||||||| || ||| ||||||||| ||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||| |
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| T |
37144328 |
gaaatatcaagatattgtaaatgcaaaagacgagcaagattatttggaattcttcctccatcaaatgaagcatggaggtcaaggaatctcaagtttctta |
37144229 |
T |
|
| Q |
166 |
aagaaccaaataattctgggaaatcattgtttga |
199 |
Q |
| |
|
||| |||||||||||||| |||| ||||||||| |
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| T |
37144228 |
gagagccaaataattctggaaaattattgtttga |
37144195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 35144305 - 35144464
Alignment:
| Q |
1 |
caaggtgctgcaaatgagacagatttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgaga |
100 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||| |||||| || || || | |||||||||||||||||||||| ||||||| | |
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| T |
35144305 |
caagatgctgcaaatgagagagatttccaagttgatgagggatttcaccctccagtctgttaaattaaagatcaagatattgcaagtgtgaaagacaggc |
35144404 |
T |
|
| Q |
101 |
aagatcatttggaattcttcctccataaaatgaactttggaggtcaagtaatctcaagtt |
160 |
Q |
| |
|
||||||||||||||||||||| || ||| ||| |||||||||||| ||||||||||| |
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|
| T |
35144405 |
aagatcatttggaattcttccatgatgaaacgaagcttggaggtcaaggaatctcaagtt |
35144464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 37130162 - 37130125
Alignment:
| Q |
9 |
tgcaaatgagacagatttccaagttgatgagggattgt |
46 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |
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| T |
37130162 |
tgcaaatgagagagatttccaagttgatgagggattgt |
37130125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 3024939 - 3025181
Alignment:
| Q |
1 |
caaggtgctgcaaatgagacagatttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgaga |
100 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
3024939 |
caaggtactgcaaatgagagagatttccaagttgatgagggattgtaccctcaaggccattgtctgaaagatcaagatattgcaagtgcgaaagacgagc |
3025038 |
T |
|
| Q |
101 |
aagatcatttggaattcttcctccataaaatgaactttggaggtcaagtaatctcaagttgcttaaagaaccaaataattctgggaaatcattgtttgaa |
200 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||||| |||||| ||||| ||||||||||| |||| ||||||||||||||||||||||| | |||||||| |
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|
| T |
3025039 |
aagatcctttggaattcttcccccatcaaatgaaccttggagatcaagaaatctcaagtttcttagagaaccaaataattctgggaaataactgtttgaa |
3025138 |
T |
|
| Q |
201 |
aacgtactccatccgaggttcaaatactttaaatgtcgcaact |
243 |
Q |
| |
|
||| | |||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
3025139 |
aacagattccaactgaggttcaaatactttaaatgccgcaact |
3025181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 29723597 - 29723743
Alignment:
| Q |
11 |
caaatgagacagatttccaagttgatgagggattgtaccctcgaggctattctgtgaaagatcaagatattgcaagtgcgaaagacgagaaagatcattt |
110 |
Q |
| |
|
||||||||| | |||||||||||||| |||||||||| ||||||| | ||||| ||||||||||||||||||||| || ||||| ||| |||||||||| |
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|
| T |
29723597 |
caaatgagagaaatttccaagttgataagggattgtaacctcgagacgattctctgaaagatcaagatattgcaactgtgaaaggcgaacaagatcattt |
29723696 |
T |
|
| Q |
111 |
ggaattcttcctccataaaatgaactttggaggtcaagtaatctcaa |
157 |
Q |
| |
|
||| ||||||| ||| |||||||| |||||||||||| | |||||| |
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|
| T |
29723697 |
ggatttcttccgtcatcaaatgaaccttggaggtcaaggagtctcaa |
29723743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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