View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_high_4 (Length: 698)
Name: NF16697_high_4
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 10 - 419
Target Start/End: Original strand, 36025604 - 36026013
Alignment:
| Q |
10 |
gaagcataggacaaaaacctaatgaagcaggaattgaacctgttaacctattattgaagagttgaacacctcttagattgttgagaagtcctaatgttga |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025604 |
gaagcataggacaaaaacctaatgaagcaggaattgaacctgttaacctattattgaagagttgaacacctcttagattgttgagaagtcctaatgttga |
36025703 |
T |
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| Q |
110 |
agggattgaaccaccaatttggttattatgaagactaagctttcttagaccttcaagttgaccaatcctttcagtgattctccccttcaatcctttccat |
209 |
Q |
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| T |
36025704 |
agggattgaaccaccaatttggttattatgaagactaagctttctaagaccttcaagttgaccaatcctctcagtgattctccccttcaatcctttccat |
36025803 |
T |
|
| Q |
210 |
ggaagctgaattataatcacttttccttgagcacatttgattccaacccaacctccagaacaagctccaaagccactatcattccagcttctcaagaacc |
309 |
Q |
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| T |
36025804 |
ggaagctgaattataatcacttttccttgagcacatttgattccaacccaacctccagaacaagctccaaagccactatcattccagcttcttaagaaac |
36025903 |
T |
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| Q |
310 |
cttttggatcaattaactcttctttgaatgcttgaagtgctaagaaatttgattgtgttacaacaactccatcccattgctcttcacacaaaactggctt |
409 |
Q |
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| T |
36025904 |
cttttggatcaattaactcttctttgaatgcttgaagtgctaagaaatttgattgtgttacaacaactccatcccattgctcttcacacaaaactggctt |
36026003 |
T |
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| Q |
410 |
cacaggaagt |
419 |
Q |
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| T |
36026004 |
cacaggaagt |
36026013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 482 - 681
Target Start/End: Original strand, 36026076 - 36026275
Alignment:
| Q |
482 |
tgggttgttgtaaaaattggaactttcttctgcatttctcatcccaagttgcaaaacctgaaaatggtcattgtaaaaaacatttaaagttagaatcttt |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36026076 |
tgggttgttgtaaaaattggaactttcttctgcatttctcatcccaagttgcaaaacctgaaaagggtcattgtaaaaaacatttaaagttagaatcttt |
36026175 |
T |
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| Q |
582 |
gtcttcattagaacaatgaatagaagtatagaacaaagattattacttgatgagtgttgtttttcttctttctagtagaagtgtccatgaagacactgtt |
681 |
Q |
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| T |
36026176 |
gtcttcattagaacaatgaatagaagtatagaacaaagattattacttgatgagtgttgtttttcttctttctagtagaagtgtccatgaagacactgtt |
36026275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 242 - 322
Target Start/End: Complemental strand, 3905621 - 3905541
Alignment:
| Q |
242 |
acatttgattccaacccaacctccagaacaagctccaaagccactatcattccagcttctcaagaacccttttggatcaat |
322 |
Q |
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|||||||||||||| |||| || |||||||| || | |||||||||||||||||| |||| | |||||||| |||||| |
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| T |
3905621 |
acatttgattccaatccaattacctgaacaagcacctataccactatcattccagcttttcaataccccttttgaatcaat |
3905541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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