View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16697_high_5 (Length: 622)
Name: NF16697_high_5
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 41067895 - 41067612
Alignment:
| Q |
17 |
catatttcattggcaacaacaacctacgggttttgtctctttgtgtctctctcaaacatagattttt-cgaaatattaccgaccacctttgcagatgttg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
41067895 |
catatttcattggcaacaacaacctacgggttttgtctctttgtgtctctctcaaacatagattttttcgaaatatttccgaccacctttgcagatgttg |
41067796 |
T |
|
| Q |
116 |
cttccttcaaaaccatatctttgttataaatagttttcacggtggtagaaagaaactagcacaaaagggttgaggaggttttttcttcaaccccaaggtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41067795 |
cttccttcaaaaccatatctttgttataaatagttttcacggtggtagaaagaaactagcacaaaagggttgaggaggttttttcttcaaccccaaggtt |
41067696 |
T |
|
| Q |
216 |
ttattcatcttcaagctcgttttttcctttatcatttcttagccataatgatgatttaaccaatacaatgaacctattcttgcc |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41067695 |
ttattcatcttcaagctcgttttttcctttatcatttcttagccataatgatgatttaaccaatacaatgaacctattcttgcc |
41067612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 374 - 622
Target Start/End: Complemental strand, 41067539 - 41067291
Alignment:
| Q |
374 |
acaaacaatgataatgttataaaaacataacctagtgcaatgtgtttaaccaattttttgtaattcttttttgtgttatgatcagatttcacaatgattt |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41067539 |
acaaacaatgataatgttataaaaacataacctagtgcaatgtttttaaccaattttttgtaattcttttttgtgttatgatcagatttcacaatgattt |
41067440 |
T |
|
| Q |
474 |
tgataatcatattcccctatgagttgttctgctgtgaaaggtgcttgtgttgatatgggattttgctagaagaaagaaaataaagtttttgataggagat |
573 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41067439 |
tgataatcatattcccctatgagttgttgtgctgtgaaaggtgcttgtgttgatatgggattttgctagaagaaagaaaataaagtttttgataggagat |
41067340 |
T |
|
| Q |
574 |
ttttcaagatgggtgaatccagcatggcaacaccaatggtgcatacacc |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41067339 |
ttttcaagatgggtgaatccagcatggcaacaccaatggtgcatacacc |
41067291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University