View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16697_high_6 (Length: 550)
Name: NF16697_high_6
Description: NF16697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16697_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 99 - 531
Target Start/End: Complemental strand, 34688487 - 34688053
Alignment:
| Q |
99 |
attaaatgtatatgcagtggggatccgacagtatatgaaagattttggagacaaacaggtgacaagagcacgatcataataccaggatggcaatccatga |
198 |
Q |
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| T |
34688487 |
attatatgtatatgcagtggggatccgacagtatatgaaagattttggagacaaacaggtgacaagagcacgatcataataccaggatggcaatccatga |
34688388 |
T |
|
| Q |
199 |
gctatttttcggatgtgtcgaacatatgttggtttcttgaggcagagtttgcaaaggaggtagtgaggttgcacagagtggtcgggaatgcagtcacaga |
298 |
Q |
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| T |
34688387 |
gctatttttcggatgtgtcgaacatatgttggtttcttgaggcagagtttgcaaaggaggtagtgaggttgcacagagtggtcgggaatgcagtcacaga |
34688288 |
T |
|
| Q |
299 |
aggacgtcacattgttgtagggacaggttcctctcaactttttcttgctgcactctatgctctctccccaaatcatgcatctcaaccaatcaacgttgtt |
398 |
Q |
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| T |
34688287 |
aggacgtcacattgttgtagggacaggttcctctcaactttttcttgctgcactctatgctctctccccaaatcatgcatctcaaccaatcaacgttgtt |
34688188 |
T |
|
| Q |
399 |
tgtgcctcaccctactactctgtcagtacctccttaannnnnnnnnnnnnnnnnnngtaacta--agatattcttcaaacagtttggtccatgtttggta |
496 |
Q |
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| T |
34688187 |
tgtgcctcaccctactactctgtcagtacctccttaactttttctttctttcttttggaactatgagatattcttcaaacagtttggtccatgtttggta |
34688088 |
T |
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| Q |
497 |
tgaaagtgaatttgtatgaataacaacgagcctct |
531 |
Q |
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| T |
34688087 |
tgaaagtgaatttgtatgaatcacaacgagcctct |
34688053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 34688616 - 34688527
Alignment:
| Q |
16 |
atgaactagtaaataaaaagcttgtttggtatggaacataataatgatctattttttaaattgtggtcaattgacttcaatcaattaaat |
105 |
Q |
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| T |
34688616 |
atgaactagtaaataaaaagcttgtttggtatggaacataataatgatctattttttaaattgtggtcaattgacttgaatcaattaaat |
34688527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 159 - 364
Target Start/End: Complemental strand, 43614605 - 43614400
Alignment:
| Q |
159 |
gacaagagcacgatcataataccaggatggcaatccatgagctatttttcggatgtgtcgaacatatgttggtttcttgaggcagagtttgcaaaggagg |
258 |
Q |
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| T |
43614605 |
gacaagaccacaataataataccaggatggcaatctatgagttatttttctgatccaacaagcatttgttggtttcttgagccagaattttcaaaggaag |
43614506 |
T |
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| Q |
259 |
tagtgaggttgcacagagtggtcgggaatgcagtcacagaaggacgtcacattgttgtagggacaggttcctctcaactttttcttgctgcactctatgc |
358 |
Q |
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| T |
43614505 |
tagtgaggttacataatgtggttggaaatgcagtaacacaaggtcgacacgttgttgttggaacaggttcatctcagttaattcttgctgctctttatgc |
43614406 |
T |
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| Q |
359 |
tctctc |
364 |
Q |
| |
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|||||| |
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| T |
43614405 |
tctctc |
43614400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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